Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium146g00006 ATGGATCGGAGCTCTTTCCGGTCGGGAATGCGAAAATCCCGTTCTAAACCCGACATATACTCAACCTTCGTGGTTCACGATGACGAAGGCGATGACGACGACGGCGTAGAGACTAATCGCCGGCGGAAATCCGGCGGCGCGCAGCCGCATGAAGATCCTTACGCGACCATGGTGTACAAAGACAACGGCCGCGACGACGACGACGACGAATACTCCTCTCTCCCTCCGCTTCTCAAGCACCTCCCCAAGGACTTCGGCGGCGGAGCGCCGCTGGACTACGATGACGACGATGACGACGACGCTGGCGACTTCGGCACTATGATCGTGAAGAGCGACCGTAGACGGCATAACGATCGCCCTTCTTCCAGCTTGGCTTCGCCGCCGTGGAAGTCTCGGAGTTCGTCTCAGGCGAGTCCTATGAATAGATTCGGCGAAGGGGAAGACGACGGTGATGAGGAGGACGATAGTGGCGGATTCTCGACATTCGTCGTTCGTTCGACGGTGAAGTCTGGCGAGAGAGAGTCGGTAAGCGGAACAGTTGTACGACGGTCCTCCGGGGGCAGCGGCGGTGTCGGTTCGACGATGGGGAGAGCGGTGGCGAGCATGCAGGGGATGGGGGATTTTGGATTCGGAAAGCAGAGAAAGGGAAGTGGATCTTCGCAGAACGATGAGGGGAGGCATCACTCGATAACGACGAAGGTTTCGACGAGTTCGATTCCTGAAAGTATTACCAGAGAGGACCCAACGATTAAATACGAATTGCTCAATGAACTTGGGAAGGGGTCCTATGGAGCTGTTTACAAAGCAAGGGATTTGAAAACCTCGGAGATGGTTGCCATCAAAGTGATATCGTTATCCGAAGGGGAGGAGGGGTATGAGGAAATCCGTGGTGAGATTGAAATGTTACAACAATGTAATCATCCTAATGTTGTCCGTTATCTTGGAAGCTATCAAGGAGAAGAGTATCTTTGGATAGTGATGGAATACTGTGGTGGTGGTAGTGTTGCTGATTTAATGGGTGTGACTGACGAGTCACTGGATGAAGGTCAAATAGCATATATCTGTAGAGAAGCACTGAAGGGTCTTGATTATCTGCACTCAATTTTTAAAGTCCATAGAGACATCAAAGGTGGGAATATCTTATTAACTGAGCAAGGGGATGTCAAGCTAGGGGATTTTGGTGTTGCTGCACAGCTTACAAGGACCATGTCAAAGCGGAATACGTTCATTGGAACTCCTCATTGGATGGCTCCAGAAGTTATTCAGGAAAGTCGCTATGATGGAAAGGTTGATGTTTGGGCTCTTGGTGTGTCTGCTATTGAAATGGCTGAGGGTGTTCCTCCAAGATCTGACGTACATCCAATGAGGGTTTTATTCATGATATCAATTGAACCAGCTCCGATGCTTGAGGATAAAGAAAAATGGTCTCTGTATTTCCATGATTTTGTTGCAAAGTGCCTAACCAAAGAGCCTCGGCTCCGTCCTACTGCATCTGAGATGTTGAAGCACAAATTCTTTGAAAAGTGGAAAACTGGATCTGCTGCAATGTTGCCAAAATTAGAGAAGGCAAGGGAAATCAGGGCTTCAATGGCTTTGCAGGTGCAAACACTTGCTCCAGCAGCATCAGAAGATCAGCTAGTTTCAAAACCAAATGATGAATATGGAGACACTGTTCCATCAAGACCTCATAACATTGGCGTTGAAGGGGCTGCTAATTTGTCATCACGTGGCACTGTGAGGAAGCTACGTGAGGTGGAAGATGTAGACATGAGTGAAGGCAACTTTGGCACTGTTATAGTCCATGCTGATGAGTTACATCAGAAGACTACACAATATACAGATTTTGCAGTTTCCGACTCTGCTGTACCAAGTGGCACAGGAGGCAGATTGGCTGACTCTGGGATTGAGAATCAGAAAGTTGACTTGACGAAGACCACCTCTTTAAGAGGATCTAGTGCTACTACCAATACTATTCAATCATCTATACCTTATGCTAGTGATTCAACTGAGCAGAGCCTCAGAATCAAAGGTAGTTATCGAGCACCAGCTGGAATGGGTAGTGATATATTCAGGGGGGAAACCGGCAGCCGTAAAGCATTTGCTTTACAAGATAAGCTCTGGTCCATTTATGCTGCTGGTAATACTGTGCCTATCCCATTCTTAAGGGCAACAGATATATCACCTATTGCTCTCTTGTCAGACAACGTACTTGGTGGCCTACAACAGGATACTGGTGGAACCGGTACAGTGGAAGCACTGCAAGAGCTTTTCAGTGGTGATGGACAGTCCAAGAAGGGCCGCAGAGCGCTAAATGAGATGCCTCTTCCTCCAAGCATTTACCAAAGGTTGACATCAAGTTCAACACTTATGAATTTGGCACAGGCTTTAGCTTACCATAAGATGTGTTACGAGGATATGCCACTGCAAGAGCTGCAAGCGACCCAGGAGCAGCGAACTATTCAAAATCTCTCTGACACACTTCGAACCATACTTCGGTTGTAG 2502 0.4812 MDRSSFRSGMRKSRSKPDIYSTFVVHDDEGDDDDGVETNRRRKSGGAQPHEDPYATMVYKDNGRDDDDDEYSSLPPLLKHLPKDFGGGAPLDYDDDDDDDAGDFGTMIVKSDRRRHNDRPSSSLASPPWKSRSSSQASPMNRFGEGEDDGDEEDDSGGFSTFVVRSTVKSGERESVSGTVVRRSSGGSGGVGSTMGRAVASMQGMGDFGFGKQRKGSGSSQNDEGRHHSITTKVSTSSIPESITREDPTIKYELLNELGKGSYGAVYKARDLKTSEMVAIKVISLSEGEEGYEEIRGEIEMLQQCNHPNVVRYLGSYQGEEYLWIVMEYCGGGSVADLMGVTDESLDEGQIAYICREALKGLDYLHSIFKVHRDIKGGNILLTEQGDVKLGDFGVAAQLTRTMSKRNTFIGTPHWMAPEVIQESRYDGKVDVWALGVSAIEMAEGVPPRSDVHPMRVLFMISIEPAPMLEDKEKWSLYFHDFVAKCLTKEPRLRPTASEMLKHKFFEKWKTGSAAMLPKLEKAREIRASMALQVQTLAPAASEDQLVSKPNDEYGDTVPSRPHNIGVEGAANLSSRGTVRKLREVEDVDMSEGNFGTVIVHADELHQKTTQYTDFAVSDSAVPSGTGGRLADSGIENQKVDLTKTTSLRGSSATTNTIQSSIPYASDSTEQSLRIKGSYRAPAGMGSDIFRGETGSRKAFALQDKLWSIYAAGNTVPIPFLRATDISPIALLSDNVLGGLQQDTGGTGTVEALQELFSGDGQSKKGRRALNEMPLPPSIYQRLTSSSTLMNLAQALAYHKMCYEDMPLQELQATQEQRTIQNLSDTLRTILRL 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium146g00006 833 CDD STKc_MAP4K3_like 251 506 - -
Vium146g00006 833 FunFam serine/threonine-protein kinase dst1 isoform X1 249 540 - -
Vium146g00006 833 MobiDBLite consensus disorder prediction 103 120 - -
Vium146g00006 833 ProSitePatterns Protein kinases ATP-binding region signature. 258 281 IPR017441 GO:0005524
Vium146g00006 833 FunFam Aurora kinase A 244 333 - -
Vium146g00006 833 MobiDBLite consensus disorder prediction 160 191 - -
Vium146g00006 833 MobiDBLite consensus disorder prediction 1 242 - -
Vium146g00006 833 SMART serkin_6 252 506 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium146g00006 833 Pfam Protein kinase domain 252 506 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium146g00006 833 SUPERFAMILY Protein kinase-like (PK-like) 251 507 IPR011009 -
Vium146g00006 833 Gene3D Transferase(Phosphotransferase) domain 1 249 540 - -
Vium146g00006 833 ProSiteProfiles Protein kinase domain profile. 252 506 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium146g00006 833 MobiDBLite consensus disorder prediction 57 74 - -
Vium146g00006 833 PANTHER SERINE/THREONINE-PROTEIN KINASE TAO 234 553 - -
Vium146g00006 833 MobiDBLite consensus disorder prediction 121 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium146g00006 Vium-Chr146 87079 109386 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium146g00006 1 833 MAP Kinase Kinase Kinase Kinase AT1G69220 58.898 0.0 864
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-Pl Vium146g00006 Pkinase 4.7e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium146g00006 - - gmx:100804995 1319.29