Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium146g00005 ATGGATCGGAGCTCTTTCCGGTCGGGAATGCGAAAATCCCGTTCTAAACCCGACATATACTCAACCTTCGTGGTTCACGATGACGAAGGCGATGACGACGACGGCGTAGAGACTAATCGCCGGCGGAAATCCGGCGGCGCGCAGCCGCATGAAGATCCTTACGCGACCATGGTGTACAAAGACAACGGCCGCGACGACGACGACGACGAATACTCCTCTCTCCCTCCGCTTCTCAAGCACCTCCCCAAGGACTTCGGCGGCGGAGCGCCGCTGGACTACGATGACGACGATGACGACGACGCTGGCGACTTCGGCACTATGATCGTGAAGAGCGACCGTAGACGGCATAACGATCGCCCTTCTTCCAGCTTGGCTTCGCCGCCGTGGAAGTCTCGGAGTTCGTCTCAGGCGAGTCCTATGAATAGATTCGGCGAAGGGGAAGACGACGGTGATGAGGAGGACGATAGTGGCGGATTCTCGACATTCGTCGTTCGTTCGACGGTGAAGTCTGGCGAGAGAGAGTCGGTAAGCGGAACAGTTGTACGACGGTCCTCCGGGGGCAGCGGCGGTGTCGGTTCGACGATGGGGAGAGCGGTGGCGAGCATGCAGGGGATGGGGGATTTTGGATTCGGAAAGCAGAGAAAGGGAAGTGGATCTTCGCAGAACGATGAGGGGAGGCATCACTCGATAACGACGAAGGTTTCGACGAGTTCGATTCCTGAAAGTATTACCAGAGAGGACCCAACGATTAAATACGAATTGCTCAATGAACTTGGGAAGGGGTCCTATGGAGCTGTTTACAAAGCAAGGGATTTGAAAACCTCGGAGATGGTTGCCATCAAAGTGATATCGTTATCCGAAGGGGAGGAGGGGTATGAGGAAATCCGTGGTGAGATTGAAATGTTACAACAATGTAATCATCCTAATGTTGTCCGTTATCTTGGAAGCTATCAAGGAGAAGAGTATCTTTGGATAGTGATGGAATACTGTGGTGGTGGTAGTGTTGCTGATTTAATGGGTGTGACTGACGAGTCACTGGATGAAGGTCAAATAGCATATATCTGTAGAGAAGCACTGAAGGGTCTTGATTATCTGCACTCAATTTTTAAAGTCCATAGAGACATCAAAGGTGGGAATATCTTATTAACTGAGCAAGGGGATGTCAAGCTAGGGGATTTTGGTGTTGCTGCACAGCTTACAAGGACCATGTCAAAGCGGAATACGTTCATTGGAACTCCTCATTGGATGGCTCCAGAAGTTATTCAGGAAAGTCGCTATGATGGAAAGGTTGATGTTTGGGCTCTTGGTGTGTCTGCTATTGAAATGGCTGAGGGTGTTCCTCCAAGATCTGACGTACATCCAATGAGGGTTTTATTCATGATATCAATTGAACCAGCTCCGATGCTTGAGGATAAAGAAAAATGGTCTCTGTATTTCCATGATTTTGTTGCAAAGTGCCTAACCAAAGAGCCTCGGCTCCGTCCTACTGCATCTGAGATGTTGAAGCACAAATTCTTTGAAAAGTGGAAAACTGGATCTGCTGCAATGTTGCCAAAATTAGAGAAGGCAAGGGAAATCAGGGCTTCAATGGCTTTGCAGGTGCAAACACTTGCTCCAGCAGCATCAGAAGATCAGCTAGTTTCAAAACCAAATGATGAATATGGAGACACTGTTCCATCAAGACCTCATAACATTGGCGTTGAAGGGGCTGCTAATTTGTCATCACGTGGCACTGTGAGGAAGCTACGTGAGGTGGAAGATGTAGACATGAGTGAAGGCAACTTTGGCACTGTTATAGTCCATGCTGATGAGTTACATCAGAAGACTACACAATATACAGATTTTGCAGTTTCCGACTCTGCTGTACCAAGTGGCACAGGAGGCAGATTGGCTGACTCTGGGATTGAGAATCAGAAAGTTGACTTGACGAAGACCACCTCTTTAAGAGGATCTAGTGCTACTACCAATACTATTCAATCATCTATACCTTATGCTAGTGATTCAACTGAGCAGAGCCTCAGAATCAAAGGTAGTTATCGAGCACCAGCTGGAATGGGTAGTGATATATTCAGGGGGGAAACCGGCAGCCGTAAAGCATTTGCTTTACAAGATAAGGTATTTTTGTGA 2127 0.4824 MDRSSFRSGMRKSRSKPDIYSTFVVHDDEGDDDDGVETNRRRKSGGAQPHEDPYATMVYKDNGRDDDDDEYSSLPPLLKHLPKDFGGGAPLDYDDDDDDDAGDFGTMIVKSDRRRHNDRPSSSLASPPWKSRSSSQASPMNRFGEGEDDGDEEDDSGGFSTFVVRSTVKSGERESVSGTVVRRSSGGSGGVGSTMGRAVASMQGMGDFGFGKQRKGSGSSQNDEGRHHSITTKVSTSSIPESITREDPTIKYELLNELGKGSYGAVYKARDLKTSEMVAIKVISLSEGEEGYEEIRGEIEMLQQCNHPNVVRYLGSYQGEEYLWIVMEYCGGGSVADLMGVTDESLDEGQIAYICREALKGLDYLHSIFKVHRDIKGGNILLTEQGDVKLGDFGVAAQLTRTMSKRNTFIGTPHWMAPEVIQESRYDGKVDVWALGVSAIEMAEGVPPRSDVHPMRVLFMISIEPAPMLEDKEKWSLYFHDFVAKCLTKEPRLRPTASEMLKHKFFEKWKTGSAAMLPKLEKAREIRASMALQVQTLAPAASEDQLVSKPNDEYGDTVPSRPHNIGVEGAANLSSRGTVRKLREVEDVDMSEGNFGTVIVHADELHQKTTQYTDFAVSDSAVPSGTGGRLADSGIENQKVDLTKTTSLRGSSATTNTIQSSIPYASDSTEQSLRIKGSYRAPAGMGSDIFRGETGSRKAFALQDKVFL 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium146g00005 708 CDD STKc_MAP4K3_like 251 506 - -
Vium146g00005 708 MobiDBLite consensus disorder prediction 103 120 - -
Vium146g00005 708 SUPERFAMILY Protein kinase-like (PK-like) 251 516 IPR011009 -
Vium146g00005 708 ProSitePatterns Protein kinases ATP-binding region signature. 258 281 IPR017441 GO:0005524
Vium146g00005 708 MobiDBLite consensus disorder prediction 160 191 - -
Vium146g00005 708 MobiDBLite consensus disorder prediction 1 242 - -
Vium146g00005 708 SMART serkin_6 252 506 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium146g00005 708 PANTHER SERINE/THREONINE-PROTEIN KINASE TAO 234 553 - -
Vium146g00005 708 FunFam serine/threonine-protein kinase dst1 isoform X1 249 540 - -
Vium146g00005 708 Pfam Protein kinase domain 252 506 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium146g00005 708 ProSiteProfiles Protein kinase domain profile. 252 506 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium146g00005 708 MobiDBLite consensus disorder prediction 57 74 - -
Vium146g00005 708 FunFam Aurora kinase A 244 333 - -
Vium146g00005 708 Gene3D Transferase(Phosphotransferase) domain 1 249 541 - -
Vium146g00005 708 MobiDBLite consensus disorder prediction 121 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium146g00005 Vium-Chr146 87078 105022 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium146g00005 1 707 MAP Kinase Kinase Kinase Kinase AT1G69220 54.570 0.0 644
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-Pl Vium146g00005 Pkinase 3.4e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium146g00005 - - gmx:100804995 1083.17