Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14693g00003 ATGAATTATATATTTCTTCTCCTTGTCACTTTCAAGATTATCAAGAGGAAGTTGATGCAGTTAAAAGAGATTATGGGATTTCAAACATCACAATCACATAGTACTAAATGGATACCACAACCAATTTTCAAAGCAAAGGACGTCCCAATTGATGTTCATGAAAATTCATTAATTCAAAGGACCACACTGAATTTGATTGATCATTCCCAAGCCAATTCCAACTACATTTTGTCTGGCTATGATTCATGGATGGTAAGACACCCTTCAGCATTGAACTCATTTGAAAGGTTGATGAAAAATGCCACAGGGAAAAGGATCATCCTTTTTCTGGATTACGACGGTACCTTATCCCCAATTGTAAATGATCCAGATCGAGCTTTCATGTCTGAAGAGATGCGTGCTACAGTACATGAAGTTGCTTCTTATTTTCCAACAGCAATAATTAGTGGAAGAAGTAGAGATAAGGTACAAGATTTCGTGAAGTTGAATAATTTGTATTATGCTGGAAGCCATGGGATGGACATAATGGCACCATCAATGCCAATTACATCCTCTGCAGGGGAACATATTGAAATTGCCATTAACAAGAGCTGCACTGAAGTTCCTTTTCAACCTGCCAAGAAGTATTTGCCAGCAATTCGAGAGATATTAAGAATACTAAGTGATGAAGTAGAGGAAATAAAAGGAGCAATGGTTGAGGACAACGGATTCTGCGTCTCTGTACACTTCCGGCAGGTCCAAGAAAAGGATTATGGTCTGTTGGAAGAGAAAGTGAAGTCTGTGCTTGAAAAGCATCCACAATTTTGCTTGACAGAGGGTAAAAAGGTTATGGAAATAAGGCCTTCTATAAAGTGGAACAAAGGAAATGCTGTAGAATATTTTCTTGACACATTAGGATTAAGCAGTTGCAATGATATCCTTCCTGTGTATATTGGCGATGACAGAACTGATGAAGATGCTTTTAAGGTCATACAGAGTAGAGAGCAAGGTTATCCAATCATAGTGTCTTCAGTTCCAAGAGAAACTAAGGCTTTGTACTCTTTGCGTGACCCGTCGGAAGTACTAATCTTTTTGTCACGTTTGGCAAAATGGAGGAAAACCGCTTACTAA 1110 0.3838 MNYIFLLLVTFKIIKRKLMQLKEIMGFQTSQSHSTKWIPQPIFKAKDVPIDVHENSLIQRTTLNLIDHSQANSNYILSGYDSWMVRHPSALNSFERLMKNATGKRIILFLDYDGTLSPIVNDPDRAFMSEEMRATVHEVASYFPTAIISGRSRDKVQDFVKLNNLYYAGSHGMDIMAPSMPITSSAGEHIEIAINKSCTEVPFQPAKKYLPAIREILRILSDEVEEIKGAMVEDNGFCVSVHFRQVQEKDYGLLEEKVKSVLEKHPQFCLTEGKKVMEIRPSIKWNKGNAVEYFLDTLGLSSCNDILPVYIGDDRTDEDAFKVIQSREQGYPIIVSSVPRETKALYSLRDPSEVLIFLSRLAKWRKTAY 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14693g00003 369 SUPERFAMILY HAD-like 107 366 IPR036412 -
Vium14693g00003 369 NCBIfam HAD-IIB family hydrolase 107 324 IPR006379 -
Vium14693g00003 369 NCBIfam trehalose-phosphatase 104 363 IPR003337 GO:0003824|GO:0005992
Vium14693g00003 369 FunFam Trehalose 6-phosphate phosphatase 206 282 - -
Vium14693g00003 369 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 63 367 IPR044651 GO:0004805|GO:0005992
Vium14693g00003 369 CDD HAD_TPP 108 354 - -
Vium14693g00003 369 Gene3D - 201 369 IPR023214 -
Vium14693g00003 369 Gene3D - 106 200 IPR023214 -
Vium14693g00003 369 FunFam Trehalose 6-phosphate phosphatase 211 369 - -
Vium14693g00003 369 FunFam Trehalose 6-phosphate phosphatase 106 192 - -
Vium14693g00003 369 Pfam Trehalose-phosphatase 109 352 IPR003337 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14693g00003 Vium-Chr14693 8652 16484 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14693g00003 104 362 Trehalose Biosynthesis Gene Families AT1G70290 26.909 3.13e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14693g00003 K01087 - gmx:100819120 623.239