Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1468g00001 ATGGCCGTGAACAATCGCTGTTTTGTGGAATGGAAAGAGCAGTTTGTTTCACAGGAGCGTGGTAATCGTGTGGTTCACTATTACCTGAAGGATGCTGCTGGAGAATCTATCCTTGCAGTGGTGGGTACTGAGAGGAGTGTCAGGCACATGTGCTATGTTGTTGCTGAGGAGTTCCTTGAAATTTGTGGTAAGGAAGGTTCCATTCCAACTGGTTTCAAATGGAGATCTAGAAGAGAGGTGGTGGATTGGCTGACATCAACGCTATCAAAGCAGAACCTGCAAGGAGATAGAAGTGTATCACCTGGTCATAACTTAGTTCAAGCTCATGAGACCACAAATGATAGTATAAATGAAATTACTGGAGCACAATTAACAGATGATAAGGACTTTCCTATGAGTAACTCCAAATTATCCAATTCAGACATTGTTTGGTCAGGAGTTGCATGGAGATGTGGCAAACAACTTAAGCATTTTCCTGCTTTTTGGAGGAATGGCATCAAAATAGAGATTCAATCCTTTGTTTTTGTTATGGGCAAGGGAGAGAATCATTATATTGCTTATGTAGAGGATATGTATGAAGACAGAAGGGGGCAGAAAAAGGTCAAGGTGAGGTGGTTTCACCATAATCAGGAAGTCAAGGGTGTAGTTCCTGTACGAAATCCTCACCCTCGAGAAGTTTTTATCACACCTTGTTCTCAAGTTATTAGTGCAGAGTGCGTAGATGGTCCTGCCACAGTCTTGACTCGTGAACACTATGAAAAGTGCATGTCTTTTTTTACACCCACTTCAAGGGACAGAACACATTTGTGCTTTAGGCAATTTAGAAGCAACAAAGTTAAGCCCTTTGACTTGAGTAAACTACGTGGCTACTATGCCCAACCAATTCTTTCTTACTTGCACCTTGATTCAATCCAGAACCCTGAGAGACTTGCAGGAGAAAATGAAGACTTGACTGCATGTGATGATGTCAAGGTAGGAGCCAAGAGGAGCAGAAGTGATAAGGGGTCTCCTCAGTCTTGGATAAGTCAACAGGGAGTTAGGAAATTGATGAGAAGTAAGCAAATGATGGTATACAAAACCTTCCAGGTTGCAAATTATGCAAGACCAGAAAGGAGATTGCTTTCTCGGAAGCAGGTTGATTATCAACCTTGGTCTATTCACACATACAAGGTTGATGACAAGATTGAGTTGCTTTGTCAAGATAGTGGCATCAGAGGCTGCTGGTTCAGGTGTACAGTTGTTCAGGTAGCCCGGAAACAGCTGAAAGTCCAATATGAAGATGTCCAGGATGAAGATGGAAATGGAAATCTGGAGGAATGGGTCCCTGCTTTCAAGTGTGCTAGGCCTGATAAACTTGGGATGAGGCATTCTGGCCGGCCCACCATAAGACCTACTCCAACTCTTGAGGAACAAGAACTGGCTGTTGAGGTTGGACATGCAGTTGATGCATGGTGGAGTGACGGCTGGTGGGAGGGGGTTGTAACTAGAATTGATCACTGTGGAGATGATAGTGTTCAAGTATACTTTCCTGGGGAATGCCTGTTGATGGAAGTGTGCAAGAAGGATTTAAGAATATCTAGAGATTGGTTAGGGGACAGTTGGATTGACATTAAGGCAAAACCCGAAATAACTAAAACTATATTCTTCACAGCTAATAATAATAGCTTTAACACGAAGCTTTCCGTGTCCCCATCAATGGACAAAGTTGGGGACACTGTTGGTTTTGTTAATTCATGTCATGATCCTTTTAGTAAGAAGTGTGATGAACTGACTATTGAGGACCAGAAGCATGTGTCTTGTGAGGGCTTCACTGAAGATGGGGTCTGTGTCCCGGATAATAAACCCTCTTCTTCAGAAAAAAATACTGAAGCTGATAATATTGAGATACATGGTTGTTGTGATGAAGATAACTGTGATGAGCATGACAGAGTTAACAATGATGATGATAGTATCAAGAATGGAGATAATAATGGTAATAATAAAGATATCAAGGTGTTTGAAACTTCTGGATCGGATTGTGAACCTGTAGAGCTCATGGAAGTGGCTGTATAA 2052 0.4206 MAVNNRCFVEWKEQFVSQERGNRVVHYYLKDAAGESILAVVGTERSVRHMCYVVAEEFLEICGKEGSIPTGFKWRSRREVVDWLTSTLSKQNLQGDRSVSPGHNLVQAHETTNDSINEITGAQLTDDKDFPMSNSKLSNSDIVWSGVAWRCGKQLKHFPAFWRNGIKIEIQSFVFVMGKGENHYIAYVEDMYEDRRGQKKVKVRWFHHNQEVKGVVPVRNPHPREVFITPCSQVISAECVDGPATVLTREHYEKCMSFFTPTSRDRTHLCFRQFRSNKVKPFDLSKLRGYYAQPILSYLHLDSIQNPERLAGENEDLTACDDVKVGAKRSRSDKGSPQSWISQQGVRKLMRSKQMMVYKTFQVANYARPERRLLSRKQVDYQPWSIHTYKVDDKIELLCQDSGIRGCWFRCTVVQVARKQLKVQYEDVQDEDGNGNLEEWVPAFKCARPDKLGMRHSGRPTIRPTPTLEEQELAVEVGHAVDAWWSDGWWEGVVTRIDHCGDDSVQVYFPGECLLMEVCKKDLRISRDWLGDSWIDIKAKPEITKTIFFTANNNSFNTKLSVSPSMDKVGDTVGFVNSCHDPFSKKCDELTIEDQKHVSCEGFTEDGVCVPDNKPSSSEKNTEADNIEIHGCCDEDNCDEHDRVNNDDDSIKNGDNNGNNKDIKVFETSGSDCEPVELMEVAV 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1468g00001 683 Pfam Agenet domain 392 466 IPR008395 -
Vium1468g00001 683 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 375 601 - -
Vium1468g00001 683 SMART agenet_At_2 473 531 IPR014002 -
Vium1468g00001 683 SMART agenet_At_2 387 452 IPR014002 -
Vium1468g00001 683 CDD Tudor_Agenet_AtDUF_rpt1_3 389 449 - -
Vium1468g00001 683 SMART BAH_4 166 285 IPR001025 GO:0003682
Vium1468g00001 683 Pfam BAH domain 171 276 IPR001025 GO:0003682
Vium1468g00001 683 ProSiteProfiles BAH domain profile. 166 285 IPR001025 GO:0003682
Vium1468g00001 683 Gene3D - 134 287 IPR043151 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1468g00001 Vium-Chr1468 359 5672 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1468g00001 401 529 PHD Transcription Factor Family AT5G58610 30.597 2.10e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1468g00001 - - gmx:100306240 1151.73