Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14681g00001 ATGGCGGTTTTACCAAGTGCTTCCTCCACCTTGGAATTGACTATATCTGTCCCCGGCTTTGCTTCTTCACCAACTCTTCTGCCTTCATCATCTGTGAAAGAATTGGACATAAACCAAGTACCTGTAGAAGAAGATTGGATGGCATCAAACATGGAAGATGAAGAAGAAAGCAGCAATGGAGACCCTCCTCGCAAGAAACTCCGTCTCACAAAGGAACAATCTCGTCTCCTTGAAGAAAGCTTCAGACAAAACCACACCCTAAACCCAAAACAAAAAGAGTCTTTGGCAATGCAACTGAAGCTGCGACCAAGGCAAGTGGAGGTGTGGTTTCAGAACCGTAGGGCCAGGAGCAAGCTGAAGCAGACAGAGATGGAGTGTGAGTACCTGAAGAGGTGGTTTGGGTCACTGACAGAGCAGAACAGAAGGCTTCAGAGGGAAGTGGAGGAACTGAGGGCCATGAAGGTGGGGCCACCCACCGTCATTTCCCCACACTCTTGTGAGCCGCTGCCAGCCTCCACATTAACCATGTGTCCCCGCTGTGAGCGCGTTACCACCACCGCCGACAAACTGCCTTCCGCCGCCGCCACTTTGTCCGCTAAAGTCCCACCGCACTCCCCTCAACCTTCTGCCGCTTGTTGA 639 0.518 MAVLPSASSTLELTISVPGFASSPTLLPSSSVKELDINQVPVEEDWMASNMEDEEESSNGDPPRKKLRLTKEQSRLLEESFRQNHTLNPKQKESLAMQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPLPASTLTMCPRCERVTTTADKLPSAAATLSAKVPPHSPQPSAAC 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14681g00001 212 Gene3D - 56 126 - -
Vium14681g00001 212 Coils Coil 133 153 - -
Vium14681g00001 212 ProSiteProfiles 'Homeobox' domain profile. 60 120 IPR001356 GO:0003677
Vium14681g00001 212 SMART halz 120 163 IPR003106 GO:0006355|GO:0043565
Vium14681g00001 212 SMART HOX_1 62 124 IPR001356 GO:0003677
Vium14681g00001 212 Pfam Homeodomain 64 118 IPR001356 GO:0003677
Vium14681g00001 212 CDD homeodomain 63 121 IPR001356 GO:0003677
Vium14681g00001 212 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 33 197 - -
Vium14681g00001 212 SUPERFAMILY Homeodomain-like 49 121 IPR009057 -
Vium14681g00001 212 MobiDBLite consensus disorder prediction 43 66 - -
Vium14681g00001 212 Pfam Homeobox associated leucine zipper 120 154 IPR003106 GO:0006355|GO:0043565
Vium14681g00001 212 ProSitePatterns 'Homeobox' domain signature. 95 118 IPR017970 GO:0000981|GO:0006355
Vium14681g00001 212 FunFam Homeobox-leucine zipper protein 18 48 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14681g00001 Vium-Chr14681 43768 46831 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14681g00001 32 194 Homeobox Transcription Factor Family AT1G70920 63.690 1.95e-63 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vium14681g00001 Homeodomain 3.5e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14681g00001 K09338 - gmx:100775341 401.364