Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1465g00001 TTTTTCCCCAGCAAGTACAATAGAGAGATAAAGAGTTTGAAGATGGAGGTGGAGAAACTCTTGATGGAGATGATAAAGGGTAGGGAAGATTGTGTGGAGAAAGGGAGAAGCAATTCATATGGGAATGATTTATTGTGTATACTCTTGGATGAGATGAAGAAAGAAAGTGGTAGCTTGAATCTTCAACTAGTTATGGATGAATGCAAAACATTTTTCTTTGCTGGTCATGAAACCACTGCTCTCTTACTCACTTGGACAGTCATGTTGCTAGCAACAAATCCTCATTGGCAAGACAAAGTCAGAGCTGAAGTCAAACACATTTTCAAAGGGGAAACTCCATCACTTGATAAACTCTCCAAGCTCACTCTGTTACAGATGGTGATAAACGAGGCAATGAGATTGTATCCTCCTGCAACTGTGCTTCCGAGAATGGTTTTCGAAGATATTGAGTTGGGAGATCTCCACATTCCTAAGGGCTTATCAATTTGGATTCCAGTGTTGGCCATTCACCATAGTGAAGAACTGTGGGGTGAAGATGCAAACGAGTTCAACCCTGAGAGGTTTGCTTCAAAATCATTCGTATCTGGTCGCTTCATACCCTTTGGTTCTGGCCCTAGAAACTGTGTTGGACAATCATTTGCCATGATGGAGGCCAAGATCATACTAGCCATGTTCATATCTCAGTTTAGCTTCACCATTTCTCAGAGTTATAAGCATGCACCAGTGCTTCTCCTCACAATTAAACCTAAATATGGTGTTCAAGTTTGTTTGAAGCATTTAGATCCATAA 789 0.4081 FFPSKYNREIKSLKMEVEKLLMEMIKGREDCVEKGRSNSYGNDLLCILLDEMKKESGSLNLQLVMDECKTFFFAGHETTALLLTWTVMLLATNPHWQDKVRAEVKHIFKGETPSLDKLSKLTLLQMVINEAMRLYPPATVLPRMVFEDIELGDLHIPKGLSIWIPVLAIHHSEELWGEDANEFNPERFASKSFVSGRFIPFGSGPRNCVGQSFAMMEAKIILAMFISQFSFTISQSYKHAPVLLLTIKPKYGVQVCLKHLDP 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1465g00001 262 Gene3D Cytochrome P450 1 261 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1465g00001 262 PRINTS P450 superfamily signature 208 219 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1465g00001 262 PRINTS P450 superfamily signature 199 208 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1465g00001 262 PRINTS P450 superfamily signature 74 91 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1465g00001 262 PRINTS P450 superfamily signature 126 137 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1465g00001 262 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 201 210 IPR017972 GO:0005506|GO:0016705
Vium1465g00001 262 PRINTS E-class P450 group I signature 63 80 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1465g00001 262 PRINTS E-class P450 group I signature 166 190 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1465g00001 262 PRINTS E-class P450 group I signature 83 109 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1465g00001 262 PRINTS E-class P450 group I signature 198 208 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1465g00001 262 PRINTS E-class P450 group I signature 208 231 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1465g00001 262 PANTHER CYTOCHROME P450 FAMILY MEMBER 1 252 - -
Vium1465g00001 262 SUPERFAMILY Cytochrome P450 2 258 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1465g00001 262 Pfam Cytochrome P450 1 239 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1465g00001 Vium-Chr1465 10940 19688 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1465g00001 1 260 Cytochrome P450 AT3G14690 42.164 3.96e-73 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1465g00001 K10717 - gmx:100812567 464.151