Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14656g00002 ATGCCTGTCCTTGAAACACTTGGTGGTGCTCTTTTTGGTGCTGTTCTTCAGATGATATTTGACAAGCTGGATTCTCATCAAGTTTTGCACTACTTTCGAGGGAGAAATCTCGACGAGAAGCTGCTGAAAAAGTTGAAGAGGAATTTGATGGACATCAATGCTGTGATAGATGATGCAGAACAAAAGCAGTTCAGTAATTCATTGGTCAAAGAATGGATTGATGAGGTTAGAGACGTCTTGTATGATGCAGAAGATCTGCTGGAGCAAATAGACTATGAATTCTCCAAGACTATGTTGAAAGCTGAATTCCAGACCAGTTCTAGCAAGGTCCACAGTTTTGAATCCAAGATCATAGCACTCATAGATGATCTAGAATATCTTTTGAACCAAAAGATTGTTAAAAATCTCAAAGTTTACAGTGGCGATAGATCTGGGTTTGGTAATAAGGTGTCGGAGAAAAAAGTTGAATCAACGTCGTTGGTGGCTGAAGAGGTTATTTATGGCAGAGATAAGGACAAAGAAATTATCTTTAGCTGGCTGACATCTGACACTAATGATAATAAGCTGTCAATACTTTCTATTGTGGGTATGGGTGGGATGGGTAAGACCACACTTGCTCAACATGTATACAATGATCCAAAGACAGAGGAAGCTAACTTTGATGAAAAAGCTTGGGTTTGCGTTTCTGATGCATTTGATGCTTTGAGAGTATCCAAAACAATTATTGGAGCTTTCACTAACTCAATATATGGCAGTGGAGACCTAGAAATGGTTCATGGAAAATTGAAAACATGGTTGCCCGGAAAGAAGTTTCTTCTTGTTCTGGATGATGTTTGGAACGAAGACCGAAACCAATGGAAAGCATTACAAACACCTCTTACGTTTGGAGCTAAAGGAAGTAAAATTATAGTCACAACACGCAGTCACAAAGTTGCTTCTATCATGCAGTCAACCTACATACTCCAACTAAAGCAATTAGATGAAGATCACAGCTGGGAAACTTTTGCTAAACATGCATTCCAAGATGAAAACTCTAAGTTGAATTCGGAGTTAAAGGAGATTGGCATGAAGATAGTTGAAAAGTGCCAAGGATTGCCTCTGGCCCTTGAAACAATAGGATGTCTTTTACAGTCAAAGTCATCTGTTTCAGAGTGGGAAGGTGTATTGACAAGCGAGATATGGGACTTACCAATAGAAGATAGTAAAATCGTCCCTACTTTGTTGCTGAGCTATTACCATCTTCCTTCTCATCTCAAGAGATGTTTCGCTTATTGTGCAATATTCCCCAAAGACTATAGGTTTGACAAGGAGAGTTTAATTCTCTTATGGATGGCTCAAAATTTTCTATATTGCTCTCAACAAAGTAAGTCTCTAGAAGAAGTAGGTGAAAACTACTTCAATGATCTAGTATCAAGGTCATTCTTTAAACAAATAATTAGGAACAAAAAAACATATTTTGTCATGCACGACCTTCTCAATGATTTAGCAAAATATGTTTCAGGTGAAATCTGCTACAGGTTAGGCGTTGATGATGAAAAAAGAGTATCAAGGAAGACCCGTCACTTATCATATGAAAGCGGTCCTATTCAATGTGATACGAGTTTATGTGATGCTAAAGGGTTACGGACATTTATAACCTTGTCCTGCGATCGTAAGATTTCAATAGAAGAGTTAATCTCCAACTGTAAGTTCTTACGAGTCTTATCATTGCATTGGTGTTTTACGGTGCCTGATAGTATAGGCGATCTTATACACCTCCGCTTATTAGACCTTTCAAATTCCAACATAAAGAGACTTCCTGACTCAACCTGTTCACTCTATAACTTGCAAGAGTTGAAGCTAAACGATTGCATGCGTTTGAAGGAGCTGCCCTTGACTTTGCATGAGCTCACCAATTTGCGCCGCCTTGAACTGATGGGAAATACTTTAATAAAGGCTCTACCCCATTTAGGAAAGTTGAAGAATCTTCACGTGTGGATGGGCATGTTTGAGGTTGGCAAAAATAGTGAGTTCAGTATTCGACAATTAGGAGAACTTGATCTTCATGGAAGGCTGTCAATTAAAAGTCTTGAAAATATCGCAAATCCCTACGAGATGAATTTGAAGAATAAAAGACATATTGTGAGGCTGAGTTTACAATGGAATTTGAAGGAGAACAATGCCGATTCAATGAAACAAAGAGAAGTACTTGAGAATTTGCAACCTTCTAGACATTTGAAGTACTTGTCAATCGATGGCTATGGTGGCACACAATTTCCCCGTTGGCTATATGATAATTCTCTATCGAATGTTGTGTCCTTAACCTTGAAGCACTGTAAATATTGCCTACTGTTGCCTTCCCTCGGACTATTGACATTTCTCAAGCACTTGGCAATAGATGGCCTTGATCAAATACTGAGGATAGATGCTGATTTTTACGGGAATAGCTCTTCTGCATTTCCATCCTTAGAAATATTGAGCTTTACTAATATGAAAGAATGGGAAGAATGGCAATGCATGAAGGGTGCTTTTCCATGTCTTCAAAGTCTTTCTCTGATGAATTGTCCCAAGCTGAAAGGAAACTTGCCAGAACAACTTTCTCTTCTAAAGAGACTGTCTATTAGACGTTGTGAACAACTTGGGGCTTCGATTCCCCTGGCAATAGAAATGGAAGGTGTGAAGATGGAGCCATCTTCATTTGATATGATAGGGCCCCTCGTGTCTGATACTCCGCTTGAATTCTTGTATATTGATTTTTGTCCGGGTAGGAATATTCCCATAAACCATTGCTACTATTTCCTTGTAGATTTAAATATCAAGAAATGTTGTGACTCTCTCACGAACTTTTCCTTGGACTTGTTTCCAAAGCTCTCCCACCTTTCGTTAAACAGGTGTCATAACCTACAGATGATATCGCAGGGACACACTCATGGTCATTTGAAGAGTTTGGAAATTAAAAAGTGTCCTCAATTTGAATCATTTCCCAATGATGGATTATTTGCACCTCAGCTAGAGACATTTTCTATCAAAGGATTGGAGAAATTGAAGTCAATGCCTAAATGCATGTCTGCCCTTCTTCCATCTCTTAATCAGCTGTACATACACAGTTGTCCAGTGGTGGAATTGTCCGAGGGATGTTTGCCATCAAATGTAAAAAAAATGTCGCTTCTGCATTGCTCCAAACTTGTGGCCTCCCTAAAGGGGGCTTGGGGAACCAACCATTCCTTAAAAGTCTTGGATATTGGCAATGTGGATGTGGAGTGTTTTCCGGGTGAAGGTTTGCTCCCACTTTCTCTTAGTTATCTAGAGATATCTGATTGTCCAAATCTTAAGAAACTCGACTTCAGGGGACTCTGTCAACTCTCCTCTCTTCAGAATTTGACTCTTCTTGACTGTCCTATACTCCAATACTTGCCAGAGGAGGGTCTGCCCAAATCCATCTCACTACTCGTAATTGAGAATTGTCCGTTGCTCAAATAG 3459 0.3938 MPVLETLGGALFGAVLQMIFDKLDSHQVLHYFRGRNLDEKLLKKLKRNLMDINAVIDDAEQKQFSNSLVKEWIDEVRDVLYDAEDLLEQIDYEFSKTMLKAEFQTSSSKVHSFESKIIALIDDLEYLLNQKIVKNLKVYSGDRSGFGNKVSEKKVESTSLVAEEVIYGRDKDKEIIFSWLTSDTNDNKLSILSIVGMGGMGKTTLAQHVYNDPKTEEANFDEKAWVCVSDAFDALRVSKTIIGAFTNSIYGSGDLEMVHGKLKTWLPGKKFLLVLDDVWNEDRNQWKALQTPLTFGAKGSKIIVTTRSHKVASIMQSTYILQLKQLDEDHSWETFAKHAFQDENSKLNSELKEIGMKIVEKCQGLPLALETIGCLLQSKSSVSEWEGVLTSEIWDLPIEDSKIVPTLLLSYYHLPSHLKRCFAYCAIFPKDYRFDKESLILLWMAQNFLYCSQQSKSLEEVGENYFNDLVSRSFFKQIIRNKKTYFVMHDLLNDLAKYVSGEICYRLGVDDEKRVSRKTRHLSYESGPIQCDTSLCDAKGLRTFITLSCDRKISIEELISNCKFLRVLSLHWCFTVPDSIGDLIHLRLLDLSNSNIKRLPDSTCSLYNLQELKLNDCMRLKELPLTLHELTNLRRLELMGNTLIKALPHLGKLKNLHVWMGMFEVGKNSEFSIRQLGELDLHGRLSIKSLENIANPYEMNLKNKRHIVRLSLQWNLKENNADSMKQREVLENLQPSRHLKYLSIDGYGGTQFPRWLYDNSLSNVVSLTLKHCKYCLLLPSLGLLTFLKHLAIDGLDQILRIDADFYGNSSSAFPSLEILSFTNMKEWEEWQCMKGAFPCLQSLSLMNCPKLKGNLPEQLSLLKRLSIRRCEQLGASIPLAIEMEGVKMEPSSFDMIGPLVSDTPLEFLYIDFCPGRNIPINHCYYFLVDLNIKKCCDSLTNFSLDLFPKLSHLSLNRCHNLQMISQGHTHGHLKSLEIKKCPQFESFPNDGLFAPQLETFSIKGLEKLKSMPKCMSALLPSLNQLYIHSCPVVELSEGCLPSNVKKMSLLHCSKLVASLKGAWGTNHSLKVLDIGNVDVECFPGEGLLPLSLSYLEISDCPNLKKLDFRGLCQLSSLQNLTLLDCPILQYLPEEGLPKSISLLVIENCPLLK 1152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14656g00002 1152 Pfam NB-ARC domain 170 389 IPR002182 GO:0043531
Vium14656g00002 1152 SUPERFAMILY L domain-like 487 870 - -
Vium14656g00002 1152 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 148 425 IPR027417 -
Vium14656g00002 1152 Gene3D Ribonuclease Inhibitor 529 834 IPR032675 -
Vium14656g00002 1152 Gene3D - 16 128 - -
Vium14656g00002 1152 PRINTS Disease resistance protein signature 191 206 - -
Vium14656g00002 1152 PRINTS Disease resistance protein signature 265 279 - -
Vium14656g00002 1152 PRINTS Disease resistance protein signature 581 597 - -
Vium14656g00002 1152 PRINTS Disease resistance protein signature 362 376 - -
Vium14656g00002 1152 SUPERFAMILY L domain-like 904 1151 - -
Vium14656g00002 1152 PANTHER DISEASE RESISTANCE PROTEIN RP 42 929 IPR044974 GO:0006952
Vium14656g00002 1152 FunFam Probable disease resistance protein At1g61300 148 319 - -
Vium14656g00002 1152 Gene3D Ribonuclease Inhibitor 1019 1149 IPR032675 -
Vium14656g00002 1152 Gene3D Ribonuclease Inhibitor 850 1018 IPR032675 -
Vium14656g00002 1152 Gene3D - 325 410 IPR042197 -
Vium14656g00002 1152 Gene3D - 146 321 IPR027417 -
Vium14656g00002 1152 ProSiteProfiles Leucine-rich repeat profile. 585 606 IPR001611 GO:0005515
Vium14656g00002 1152 Coils Coil 42 62 - -
Vium14656g00002 1152 Gene3D - 411 498 IPR036388 -
Vium14656g00002 1152 FunFam Probable disease resistance protein At1g63360 411 498 - -
Vium14656g00002 1152 Pfam Rx N-terminal domain 13 98 IPR041118 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14656g00002 Vium-Chr14656 4487 9226 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14656g00002 192 386 WRKY Transcription Factor Family AT5G45050 28.155 3.05e-08 56.2