Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14654g00001 ATGGGTTCTTGTCTGAGTAAAAGAGGGTCAGAGCCAGAAGAACACATTGGTTACAGAAATGCTGTTGGGGGAGCCCACAATCACAAGAGCCATGAACCCTTTGTCAGCCAATTTCCTGAGAAACATGCTCCTCAGGCTGCTTGGAGGGCCACTGTTCCTTCTCCAGGCCCAAAACATGCTCACAGGGCTGACACAATCACTGGGAAGCCATTTGAGGATGTTAAGCAGCACTATACTCTTGGGAAAGAATTGGGGAGAGGCCAATTTGGGGTGACTTATCTCTGCACCGAAAATTCAACTGGTTTGCAATATGCCTGCAAGTCCATCTCAAAGAGGAAGCTTGTGAGAAGAGATGACAAGGAGGATATGAGGAGGGAGATTCAAATTATGCAGCATTTAAGTGGACAATCCAACATTGTGGAGTTCAAAGGTTCTTTTGAGGAAAAGAACTCTGTTCATGTGGTCATGGAGCTGTGTGCAGGTGGTGAACTTTTTGATAGGATCATTGCAAAGGGGCACTACAGTGAAAGGGCTGCTGCTGCAGTGTGTAGACAGATTGTTAACGTTGTTAACATCTGCCATTTTATGGGAGTGATCCATAGGGATCTGAAGCCAGAGAATTTCTTGTTATCCAGTAAGGATGATAAGGGACTTCTCAAGGCCACAGATTTTGGTTTATCAGTCTTCATAGAAGAAG 697 0.4519 MGSCLSKRGSEPEEHIGYRNAVGGAHNHKSHEPFVSQFPEKHAPQAAWRATVPSPGPKHAHRADTITGKPFEDVKQHYTLGKELGRGQFGVTYLCTENSTGLQYACKSISKRKLVRRDDKEDMRREIQIMQHLSGQSNIVEFKGSFEEKNSVHVVMELCAGGELFDRIIAKGHYSERAAAAVCRQIVNVVNICHFMGVIHRDLKPENFLLSSKDDKGLLKATDFGLSVFIEE 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14654g00001 232 Gene3D Phosphorylase Kinase; domain 1 80 163 - -
Vium14654g00001 232 SMART serkin_6 78 230 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium14654g00001 232 ProSiteProfiles Protein kinase domain profile. 78 232 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium14654g00001 232 ProSitePatterns Protein kinases ATP-binding region signature. 84 107 IPR017441 GO:0005524
Vium14654g00001 232 Pfam Protein kinase domain 78 230 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium14654g00001 232 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
Vium14654g00001 232 FunFam Calcium-dependent protein kinase 1 80 163 - -
Vium14654g00001 232 PANTHER SERINE/THREONINE-PROTEIN KINASE 72 229 - -
Vium14654g00001 232 Gene3D Transferase(Phosphotransferase) domain 1 164 232 - -
Vium14654g00001 232 SUPERFAMILY Protein kinase-like (PK-like) 76 230 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14654g00001 Vium-Chr14654 88 784 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14654g00001 1 232 EF-hand Containing Proteins AT3G20410 60.956 3.55e-101 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vium14654g00001 Pkinase 2.6e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14654g00001 K13412 - gmx:100794852 395.586