Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1464g00017 ATGGATGAGATATATATTATTAGTTCGTCAGATGATGATGAGTTGGAGGAGATAGATGTTCAAAAGAGAACTCTTCCAACAACTAATGAAAGGAGTTCAGATTATGGTCGGCGGCATACTTCAACAGGGGCTAATAGTTCAAACCTAAGTTCTTCTAGTTTGTATAATCATTCACAAAGCAAACCTCTTACACTACCTGTGTCCAGTACCAATGCACTAAACCACAGAATTGTGCGAAGAGATGAACCTTCATACCATGCTCAGAATGGAAATACAAGTCCGCAACAACCAGTTAATTCCCGAATTTCAAAGTCTCATGGTGCAGATTATGAGAAAATGTCATCTCATCAAGCTTTCAAGAGGACCCTTCCTTCAACTCTTCAGCCTTCTGTAACAAGGGCTCTTCCTTCTCCTTTATATGCACCAGACATCCGATTAAGCAACTTAAAAGATAGCACAGACAATAGTCATCTTCATGATACATATAAGAATCGTCGCCAGGGAATAGGGCCTAGCATATCCGGTGATAGGGCCTACATTCGTGATAGTTTTATCAGGGGCTATGACGAAGGTCATTTATTGTATCAAAATGGTGGGAACAGGATTCTTCCATCATCTTTGGTGCTTGGAAAGGCCATAACTCCACAAACTTTGAATGTCACATATAGTGAATCTGCATATCGTTCTGGAATAGGTGATGAAAGGTCTGCCGAAAATGACGAGAGACTTATTTATGAGGCAGCATTACAGGATATCAGTCAACCTAAAACAGAATATGACTTACCTGCTGGTGTATTGTCTGTCTCTCTTCTGAGACATCAGAAAATTGCATTGGCTTGGATGCTTCAGAGGGAAACCAAAAGTTTGCATTGCTTGGGGGGGATTTTGGCTGATGATCAGGGTCTTGGAAAGACAGTATCAATGATTTCCCTCATTCTGGCATTGAGGTCATTACAGTCAAAATCAAAAACAGATGATGTGTTCAATCATAAAACTGAAGCTTTGAATTTGGATGACGATGATGACAATGGTGGTATAGATGTGGAAAAGCATAAAAATAGTATGGAAGCTGATGATTTGTTTCCTAGTAGAGAACCTAGCAGTTCAACACAGACACCTGGTAGAAAAAGGCCAGCTGCTGGTACCCTAGTTGTCTGCCCTGCCAGTGTTATGCGACAGTGGGCCAGGGAACTTGATGAGAAAGTTGGAGATGAAAAGCTTTCTGTTTTAGTTTATCATGGGGGCAGTAGGACTAAGAATCATGTTGAACTTGCAAAATTTGATGTGGTTCTAACAACATACTCTATTGTGACTAATGAAGTTCCTAAGCAACCATTAGTTGAGGATGACGATATTGAGGACAAAAATGGGGAAAGATTTGGGTTATCTTCTGAGTTTTCTGTTAAAAAAAGGAAAAAACAATTTAACGGAAATAAGAAGGGTAAAAAGGGTAGAAAAGGAATTGACAGTTCTACGGAATGTGGTTCTGGTCCTCTTGCAAAAGTAGGTTGGTTTAGGGTTATTCTAGATGAGGCTCAAACAATAAAAAATCACAGAACTCAGGTGGCTAGAGCTTGCTGCAGCCTTAGAGCCAAAAGAAGGTGGTGCTTATCTGGAACACCTATTCAAAATACTATTGATGATTTGTATAGCTACTTTAGATTCCTGAAGTATGATCCTTATGCTGTATATAAATCATTCTACAACACCATAAAGGTTCCTATATCCCGAGATTCCATTCAAGGTTACAAGAAACTTCAAGCAGTTTTAAGGGCCATAATGCTACGTCGTACAAAAGGAACTTTGCTTGATGGGAAGCCAATAATCAATTTGCCTCCTAAAACAATTGAGCTCAGTAAAGTGGATTTCTCCATTGAGGAGCGAGCCTTCTATACTAAGTTGGAATCAGACTCACGCAATCAATTTAATGCATATGCTGCTGCTGGGACAGTCAATCAAAACTATGCTAATATTCTTTTAATGCTCTTACGTCTCCGACAGGCTTGTGATCATCCACGTCTTGTTAAAGATATTGATTCTGATCCTGTTGGGAAGGATTCTGTTGAAATGGCAAAAACTCTTCCAAGGGAATTGCTGATTAATCTGTTTAGTTGTTTGGATGCAACCTTTACTATCTGTCATGTTTGCAATGTGAGTTAA 2160 0.3944 MDEIYIISSSDDDELEEIDVQKRTLPTTNERSSDYGRRHTSTGANSSNLSSSSLYNHSQSKPLTLPVSSTNALNHRIVRRDEPSYHAQNGNTSPQQPVNSRISKSHGADYEKMSSHQAFKRTLPSTLQPSVTRALPSPLYAPDIRLSNLKDSTDNSHLHDTYKNRRQGIGPSISGDRAYIRDSFIRGYDEGHLLYQNGGNRILPSSLVLGKAITPQTLNVTYSESAYRSGIGDERSAENDERLIYEAALQDISQPKTEYDLPAGVLSVSLLRHQKIALAWMLQRETKSLHCLGGILADDQGLGKTVSMISLILALRSLQSKSKTDDVFNHKTEALNLDDDDDNGGIDVEKHKNSMEADDLFPSREPSSSTQTPGRKRPAAGTLVVCPASVMRQWARELDEKVGDEKLSVLVYHGGSRTKNHVELAKFDVVLTTYSIVTNEVPKQPLVEDDDIEDKNGERFGLSSEFSVKKRKKQFNGNKKGKKGRKGIDSSTECGSGPLAKVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYAVYKSFYNTIKVPISRDSIQGYKKLQAVLRAIMLRRTKGTLLDGKPIINLPPKTIELSKVDFSIEERAFYTKLESDSRNQFNAYAAAGTVNQNYANILLMLLRLRQACDHPRLVKDIDSDPVGKDSVEMAKTLPRELLINLFSCLDATFTICHVCNVS 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1464g00017 719 MobiDBLite consensus disorder prediction 150 164 - -
Vium1464g00017 719 MobiDBLite consensus disorder prediction 1 15 - -
Vium1464g00017 719 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 45 713 - -
Vium1464g00017 719 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 606 675 IPR027417 -
Vium1464g00017 719 SMART ultradead3 266 576 IPR014001 -
Vium1464g00017 719 MobiDBLite consensus disorder prediction 85 103 - -
Vium1464g00017 719 Pfam SNF2-related domain 273 675 IPR000330 GO:0005524|GO:0140658
Vium1464g00017 719 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 254 597 IPR027417 -
Vium1464g00017 719 MobiDBLite consensus disorder prediction 335 380 - -
Vium1464g00017 719 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 478 609 - -
Vium1464g00017 719 MobiDBLite consensus disorder prediction 1 70 - -
Vium1464g00017 719 MobiDBLite consensus disorder prediction 473 492 - -
Vium1464g00017 719 Gene3D - 367 453 IPR038718 -
Vium1464g00017 719 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 285 559 IPR014001 -
Vium1464g00017 719 MobiDBLite consensus disorder prediction 84 115 - -
Vium1464g00017 719 MobiDBLite consensus disorder prediction 146 174 - -
Vium1464g00017 719 Gene3D - 244 331 IPR038718 -
Vium1464g00017 719 Gene3D - 469 610 IPR038718 -
Vium1464g00017 719 MobiDBLite consensus disorder prediction 38 70 - -
Vium1464g00017 719 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 363 450 - -
Vium1464g00017 719 CDD DEXDc_SHPRH-like 270 597 - -
Vium1464g00017 719 MobiDBLite consensus disorder prediction 335 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1464g00017 Vium-Chr1464 141373 148848 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1464g00017 1 717 RAD5 or RAD16-like Gene Family AT1G50410 54.939 0.0 716
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vium1464g00017 SNF2_N 4.4e-71 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1464g00017 - - gmx:100811598 1119.76