Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1464g00016 ATGCTTCAGAGGGAAACCAAAAGTTTGCATTGCTTGGGGGGGATTTTGGCTGATGATCAGGGTCTTGGAAAGACAGTATCAATGATTTCCCTCATTCTGGCATTGAGGTCATTACAGTCAAAATCAAAAACAGATGATGTGTTCAATCATAAAACTGAAGCTTTGAATTTGGATGACGATGATGACAATGGTGGTATAGATGTGGAAAAGAATAAAAATAGTATGGAAGCTGATGATTTGTTTCCTAGTAGAGAACCTAGCAGTTCAACACAGACACCTGGTAGAAAAAGGCCAGCTGCTGGTACCCTAGTTGTCTGCCCTGCCAGTGTTATGCGACAGTGGGCCAGGGAACTTGATGAGAAAGTTGGAGATGAAAAGCTTTCTGTTTTAGTTTATCATGGGGGCAGTAGGACTAAGAATCATGTTGAACTTGCAAAATTTGATGTGGTTCTAACAACATACTCTATTGTGACTAATGAAGTTCCTAAGCAACCATTAGTTGAGGATGACGATATTGAGGACAAAAATGGGGAAAGATTTGGGTTATCTTCTGAGTTTTCTGTTAAAAAAAGGAAAAAACAATTTAACGGAAATAAGAAGGGTAAAAAGGGTAGAAAAGGAATTGACAGTTCTACGGAATGTGGTTCTGGTCCTCTTGCAAAAGTAGGTTGGTTTAGGGTTATTCTAGATGAGGCTCAAACAATAAAAAATCACAGAACTCAGGTGGCTAGAGCTTGCTGCAGCCTTAGAGCCAAAAGAAGGTGGTGCTTATCTGGAACACCTATTCAAAATACTATTGATGATTTGTATAGCTACTTTAGATTCCTGAAGTATGATCCTTATGCTGTATATAAATCATTCTACAACACCATAAAGGTTCCTATATCCCGAGATTCCATTCAAGGTTACAAGAAACTTCAAGCAGTTTTAAGGGCCATAATGCTACGTCGTACAAAAGGAACTTTGCTTGATGGGAAGCCAATAATCAATTTGCCTCCTAAAACAATTGAGCTCAGTAAAGTGGATTTCTCCATTGAGGAGCGAGCCTTCTATACTAAGTTGGAATCAGACTCACGCAATCAATTTAATGCATATGCTGCTGCTGGGACAGTCAATCAAAACTATGCTAATATTCTTTTAATGCTCTTACGTCTCCGACAGGCTTGTGATCATCCACGTCTTGTTAAAGATATTGATTCTGATCCTGTTGGGAAGGATTCTGTTGAAATGGCAAAAACTCTTCCAAGGGAATTGCTGATTAATCTGTTTAGTTGTTTGGATGCAACCTTTACTATCTGTCATGTTTGCAATGATCACCCTGATCGCCCTGTTATTACCATGTGTGGCCATGTCTTCTGTTATGAATGTGTACAGGAATATTTGTCTGGTGATGATAATACTTGCCCTGCTGTTAATTGTAAAGAAACAATCGGTGATGATCTTGTTTTCTCCAAAGTTACTTTGAAAAGTTGTATCTCTGATGAGGGAGGCACTTCTAGTTCTTCAAATTCACATCTTAGTGATTATTCGCAAGTGCAGCGGGATGATTACATTTCATCTAAAATCAAAGCTGTTCTTGAGGTTTTGCAGTCAAATTGTAACGTGAAAATATCCAATTCTGACTTACAGAACTCTGGATGTTGTAGAAATTCGCCGTCGTCTTCTGTTGATCTAGATGTTGATGACAGTGATTCAGAGGCTAGGGTTGCAAAACACACGAGAAAGTATTCAGGGTCTACAACCGAAGGATCGATAAAGGCTATAGTTTTTTCCCAGTGGACTAGCATGTTGGATTTAGTTGAGACATCATTGTGTCAATATGGTATAGTGTACAGGAGACTTGATGGTAGGATGACTCTGGGTGCAAGGGACAAAGCTGTTAGGGATTTCAATTCTGAACCTGAGATAACTGTCATGCTGATGTCACTAAAGGCGGGAAACCTTGGTTTGAATATGGTTGCTGCTTGTCATGTTATTCTTTTGGATCTTTGGTGGAATCCAACTACTGAAGATCAAGCTATTGATCGAGCCCATAGAATTGGACAAACTCGTCCTGTTACTGTGACAAGGATTACTATAAAAGATACCGTTGAAGATCGGATACTGTCTCTTCAGGAGGAAAAGAGAAAAATGGTTGCATCTGCTTTTGGGGAAGACCATGCTGGTGGGTCTGGAACTCGCCTTACAGTGGATGATCTGAAATATCTCTTCATGGTCTAG 2220 0.3964 MLQRETKSLHCLGGILADDQGLGKTVSMISLILALRSLQSKSKTDDVFNHKTEALNLDDDDDNGGIDVEKNKNSMEADDLFPSREPSSSTQTPGRKRPAAGTLVVCPASVMRQWARELDEKVGDEKLSVLVYHGGSRTKNHVELAKFDVVLTTYSIVTNEVPKQPLVEDDDIEDKNGERFGLSSEFSVKKRKKQFNGNKKGKKGRKGIDSSTECGSGPLAKVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYAVYKSFYNTIKVPISRDSIQGYKKLQAVLRAIMLRRTKGTLLDGKPIINLPPKTIELSKVDFSIEERAFYTKLESDSRNQFNAYAAAGTVNQNYANILLMLLRLRQACDHPRLVKDIDSDPVGKDSVEMAKTLPRELLINLFSCLDATFTICHVCNDHPDRPVITMCGHVFCYECVQEYLSGDDNTCPAVNCKETIGDDLVFSKVTLKSCISDEGGTSSSSNSHLSDYSQVQRDDYISSKIKAVLEVLQSNCNVKISNSDLQNSGCCRNSPSSSVDLDVDDSDSEARVAKHTRKYSGSTTEGSIKAIVFSQWTSMLDLVETSLCQYGIVYRRLDGRMTLGARDKAVRDFNSEPEITVMLMSLKAGNLGLNMVAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKDTVEDRILSLQEEKRKMVASAFGEDHAGGSGTRLTVDDLKYLFMV 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1464g00016 739 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 83 170 - -
Vium1464g00016 739 Pfam SNF2-related domain 11 395 IPR000330 GO:0005524|GO:0140658
Vium1464g00016 739 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 5 279 IPR014001 -
Vium1464g00016 739 SMART helicmild6 598 681 IPR001650 -
Vium1464g00016 739 MobiDBLite consensus disorder prediction 65 79 - -
Vium1464g00016 739 Pfam Zinc finger, C3HC4 type (RING finger) 432 477 - -
Vium1464g00016 739 MobiDBLite consensus disorder prediction 193 212 - -
Vium1464g00016 739 CDD SF2_C_SNF 582 690 - -
Vium1464g00016 739 SMART ultradead3 7 296 IPR014001 -
Vium1464g00016 739 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 317 IPR027417 -
Vium1464g00016 739 Gene3D - 483 738 IPR027417 -
Vium1464g00016 739 CDD DEXDc_SHPRH-like 11 317 - -
Vium1464g00016 739 ProSiteProfiles Zinc finger RING-type profile. 433 472 IPR001841 -
Vium1464g00016 739 Gene3D - 87 173 IPR038718 -
Vium1464g00016 739 SUPERFAMILY RING/U-box 431 491 - -
Vium1464g00016 739 MobiDBLite consensus disorder prediction 541 558 - -
Vium1464g00016 739 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 426 482 IPR013083 -
Vium1464g00016 739 MobiDBLite consensus disorder prediction 541 563 - -
Vium1464g00016 739 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 326 738 IPR027417 -
Vium1464g00016 739 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 1 738 - -
Vium1464g00016 739 Pfam Helicase conserved C-terminal domain 584 681 IPR001650 -
Vium1464g00016 739 ProSitePatterns Zinc finger RING-type signature. 448 457 IPR017907 -
Vium1464g00016 739 Gene3D - 1 51 IPR038718 -
Vium1464g00016 739 Gene3D - 189 330 IPR038718 -
Vium1464g00016 739 SMART ring_2 433 471 IPR001841 -
Vium1464g00016 739 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 568 734 IPR001650 -
Vium1464g00016 739 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 198 329 - -
Vium1464g00016 739 MobiDBLite consensus disorder prediction 58 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1464g00016 Vium-Chr1464 132123 139938 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1464g00016 1 639 RAD5 or RAD16-like Gene Family AT1G50410 62.021 0.0 772
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vium1464g00016 SNF2_N 7.2e-71 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1464g00016 - - vum:124826544 1405.58