LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium1464g00013	ATGGCTGAGTGTGAATTTGAACTCGATCTTGAAGAGAAATCATGGCATCTCTTTGCACTCCTTCTCCGAATTGGCCACGCAGTCTATCCGTCACGTCTCGCCGCAGAGTGTCGTTTATTTGCTGCATCGCCGGACTTTGTCTGCTACGTCAGTTCTCTTCCTGGTTCACCCCTCTCTGTTACTGACAATGGACTAGTCACACCCTCTGTTAGTGCGGTTTTTGCACTTGGAAGCTTCTTCTCTGTCCGTCTCTCCCCTGAACGGCAAAAGCATTGTTTTAGGAAACGCAAGTTGTTGTTCGACTCGGCGAAAGATGGAATAGAACACAAAAGGTTAGCAATTGGAAATGGAATTCGGGAAATATCTTTCCAGAGTTGTGCTGATGCTGCAGAGGCTCTGATGAGAAGAAACTTCCCTATAATAAAATTTGAATCACAGAATATAGGTAGTGGGAATTTTATATTCCCCTTGCGTGTTGATAAAAATGAAAAATGTTCAGGTTATCTGATGCCAAATTTTAAACATAGGCATGATGTCAGCCCAACCATGTCTAATGAAGAGGTTTCTAAACCAATTATCAAAAACTTAAACAGTCCAAAGCTAGCGGACGTAAATAGATTCATGGCATGTAATCTCCGTGTTGATCGTGCCATGTTAGAACCCTCAGTATGCAAGAACGGCATTGATGTTAATAGCTTTGGATTTGGGAAGAAAATGGATTGTTTTGATGCTTTTACGCATGACAGTACTGAACTAAATAGTATTACTCATGTAGCAAGTGGTACGGGTGAAAGTACTGTATGCAAAAATCTACCAGGAAGATCTAATGAAGATGATGAGGTGCAAAGTGGTTCAAAGAAGGGGCTTATTGATACTGGTTCAAATAGAGACAAGGAAGATGTTACTCAGATGGTCAATGCTGTACTCTGTGGAGAAGAATTAACTAATGGTTTGCAACAAAAGAACTCATGCCTTGCAATAAATTTAGAAACAATGGAGGGTGAGAGAAACATAATAACTTATAAAAGAGCTAATTCCTCTTTAAATCCTAAGCGGCCTTTGAAATCTTCTAACACATTAAAGAGGGGACAGAAGAACGGTCTACATCCCAAGTCACAGATTCTTAAAGGGTCACCAGCCAACAACAAATGTAATATTGTTCCACAAAATGTTGATCAATTTAAAAATAATCAGAAACTTGCAACGAGGAAGCAAAATCATAAAGAGAATAAGGCAGAAAATATTCCCGCTACTACTAAGGTGGAGAAAAAAACATATCCATCCTTTGAAGCTTTTACAATAGAGGAAGAAGAAGGTTCAGGTGGTTATGGCACTGTTTACCGTGCTCAAAGAACTACAGATGGAAAACGGGTTGCAATAAAATGTCCTCATAGTAATGCTCATATAAATCACGTAACTACTGAACGGAATATGCTCGAGCGTTTTGGTGGTAAAAACTTCATAATAAGATACGAAGGTTCTTTGAAAAATAACAATACCGAATGCTTTGTTTTAGAGCATGTTGAGCACGAGAGACCTGAGGTTTTGAAAAAGGAAATTGATTTATTACAGATTCAATGGTACGGTTATTGCCTGTTCAGGGCCCTTTATTGTTTGCACAAAGAGGGAGTTGTTCACAGAGACGTTAAACCTGGAAACTTCCTTTTCTCTCGAAAGCAAAGCAGAGGTTACCTTATTGATTTCAACCTAGCCATGGATTTGAAGCATAAGAACAAAGTTGGAAGTAAATCAAAACCCAACCTGGTTGCATCATCCCATAATGTTTCTCTTTCTTCTCGTTCTGCTCCTTTGGTCCGAGGCAAGAATCTTGGAGGCAGCAAGTCTTTAACATCCAATAAAAGAGCTTTGGCGGATTATAAGAATTATTCTGAACTTAACAGGCATGTGAAACAAAAGGCTTTTACTGGTCCTCAGAAAAATGGTCCCGACATGGTTGGTGGGAGTTTTTCTAGAGCACAAGGAACAGACGGCTCGGGTATAACTTCTGCTAGAGATGCTAGCACTAGGACTGCTTCTGCAGAGAGGCTCAGGGAACCTTTACCTTCCCACGGAAGAAAGGAGCTTATCAGCTTTGTGAATACTATGAAATATACAAACAACAGTTCAATAATAGGTCCTTCCTCTCAAAGGAAAAGAGTTACTGCTCCCTCAAGCAGAGTAGATAGCAAGATTTTTCATATTACCCCAATGCCTCTGCATTCATCTACAGTTGGTGCGGTATTGAGAAGCAAAGGAGATGGAAAACAGAAAAAAGAAGGTTCATGTGTTGGAACCAAAGGATTCCGTGCACCGGAGGTTTTGTTAAGATCTCAGCATCAGGGACATAAGATTGATATTTGGTCAGCTGGCGTTACTCTACTCTACATGGTGATAGGAAAGACTCCTTTCACTGGCGACCCGGAACAGAACATAAAAGAAATTGTAAAATTGCGGGGAAGTGAAGAGTTTTGGGAAGTGGCCAAGCTACATGACCGTGAAGTGTCTTTTCCTGAGGAGTTACTTGATGAGCGATACTTGCAGTCATGTGACTTGGGAGCCTGGTGCAAAACTCACACAAAGAGACCAGAATTTCTTGAACAGATCCCGAAATCGTTGTTTGATTTGATAGACAAGTGTCTAACAGTTAATCCAAGAAATAGACTTAGTGCTGAAGATGTTTTGAGACATCAATTCTTTGACTCATTAAACGACTCTCTTAGGAAGCAAAGGATGATGCAACGTGCTATCAGATCAGAGGCTGCAGCAGCTTCTGCTGCAATCTAA	2784	0.4052	MAECEFELDLEEKSWHLFALLLRIGHAVYPSRLAAECRLFAASPDFVCYVSSLPGSPLSVTDNGLVTPSVSAVFALGSFFSVRLSPERQKHCFRKRKLLFDSAKDGIEHKRLAIGNGIREISFQSCADAAEALMRRNFPIIKFESQNIGSGNFIFPLRVDKNEKCSGYLMPNFKHRHDVSPTMSNEEVSKPIIKNLNSPKLADVNRFMACNLRVDRAMLEPSVCKNGIDVNSFGFGKKMDCFDAFTHDSTELNSITHVASGTGESTVCKNLPGRSNEDDEVQSGSKKGLIDTGSNRDKEDVTQMVNAVLCGEELTNGLQQKNSCLAINLETMEGERNIITYKRANSSLNPKRPLKSSNTLKRGQKNGLHPKSQILKGSPANNKCNIVPQNVDQFKNNQKLATRKQNHKENKAENIPATTKVEKKTYPSFEAFTIEEEEGSGGYGTVYRAQRTTDGKRVAIKCPHSNAHINHVTTERNMLERFGGKNFIIRYEGSLKNNNTECFVLEHVEHERPEVLKKEIDLLQIQWYGYCLFRALYCLHKEGVVHRDVKPGNFLFSRKQSRGYLIDFNLAMDLKHKNKVGSKSKPNLVASSHNVSLSSRSAPLVRGKNLGGSKSLTSNKRALADYKNYSELNRHVKQKAFTGPQKNGPDMVGGSFSRAQGTDGSGITSARDASTRTASAERLREPLPSHGRKELISFVNTMKYTNNSSIIGPSSQRKRVTAPSSRVDSKIFHITPMPLHSSTVGAVLRSKGDGKQKKEGSCVGTKGFRAPEVLLRSQHQGHKIDIWSAGVTLLYMVIGKTPFTGDPEQNIKEIVKLRGSEEFWEVAKLHDREVSFPEELLDERYLQSCDLGAWCKTHTKRPEFLEQIPKSLFDLIDKCLTVNPRNRLSAEDVLRHQFFDSLNDSLRKQRMMQRAIRSEAAAASAAI	927

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium1464g00013	927	SUPERFAMILY	Protein kinase-like (PK-like)	416	904	IPR011009	-
	Vium1464g00013	927	MobiDBLite	consensus disorder prediction	344	366	-	-
	Vium1464g00013	927	Gene3D	Transferase(Phosphotransferase) domain 1	741	925	-	-
	Vium1464g00013	927	FunFam	Probable serine/threonine-protein kinase DDB_G0291918	424	587	-	-
	Vium1464g00013	927	MobiDBLite	consensus disorder prediction	266	297	-	-
	Vium1464g00013	927	Pfam	Protein kinase domain	758	899	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium1464g00013	927	Pfam	Protein kinase domain	434	579	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium1464g00013	927	Gene3D	Transferase(Phosphotransferase) domain 1	393	592	-	-
	Vium1464g00013	927	SMART	serkin_6	432	899	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium1464g00013	927	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	544	556	IPR008271	GO:0004672\|GO:0006468
	Vium1464g00013	927	MobiDBLite	consensus disorder prediction	344	380	-	-
	Vium1464g00013	927	MobiDBLite	consensus disorder prediction	658	676	-	-
	Vium1464g00013	927	PANTHER	OVARIAN-SPECIFIC SERINE/THREONINE-PROTEIN KINASE LOK-RELATED	367	914	-	-
	Vium1464g00013	927	MobiDBLite	consensus disorder prediction	273	297	-	-
	Vium1464g00013	927	MobiDBLite	consensus disorder prediction	640	682	-	-
	Vium1464g00013	927	ProSiteProfiles	Protein kinase domain profile.	432	899	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium1464g00013	927	FunFam	Kinase like protein	739	910	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium1464g00013	Vium-Chr1464	74203	81047	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium1464g00013	763	905	Core Cell Cycle Gene Families	AT2G38620	33.775	2.04e-11	63.5

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	Group-Pl-2	Vium1464g00013		Pkinase	7e-21	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium1464g00013	K02214		-	gmx:100783107	1391.33