Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1463g00001 ATGAAAAAATTAAATGGTGCTTACTTTCCTGAGGAGAAACTCTGCAAATGGTTCACTCAATTACTGTTGGCAGTGGAATACCTGCATTCAAATTTTGTTTTGCATCGTGACCTGAAGTGTTCCAACATCTTTCTTACCAAGGATCAGGATGTTCGCCTAGGGGATTTTGGCCTTGCTAAGACACTAAAAGCAGATGATTTGGCTTCCTCGGTGGTAGGAACTCCTAATTACATGTGTCCTGAACTGCTTGCTGATATACCGTATGGATTCAAATCTGATATTTGGTCACTAGGGTGTTGTATATACGAGATGGCTGCTCATCGCCCTGCTTTTAAAGCTTTTGATATGGCAGGGTTGATAAGCAAGATAAACCGTTCTTCCATTGGCCCTTTGCCTCCATGTTATTCCCCTTCCTTGAAAACACTGATAAAGGGCATGCTAAGAAAAAATCCTGAACATCGACCAACAGCATCTGAGGTGTTAAAGCACCCTTATTTACAGCCTTATGTGGATCAATACCGTCCAGCTTTCAGTCCTCCATCAACCTGTTCTCCTGAAAAATCAATTTCTACTGTCAACTATCCTCGGAAAAATATGGCTGAAAGTCAAAACAGTAATAGTTCCAACAGTGACAAAGATAGTTTGATGTCAAATGAGAAAAGCATTGCAACAGCAGTACCAAAGTGTGAGAACAAAGCCACTGAGATGGATCAAACATCACTCGATGATGATGGTTCAGAGGAAGAAAGTGGCTCTAGAAATGCCAATGGCAATACCAAAACAGCTGAGCAAGAGGCGATGAAACCATCTCATAATGCACACCATTCTCCCGTTGAATCTAAGCAGCCAAAAACAATTAGAAATATAATGATGGCATTGAAAGAAGGAAAGGTTAGAGAAGCAACTTCTCCAATGAGAGGCAATCGTGTAAAGCCTGGTGGTGTATCAACTCAGAAAATAAGTACTGAGACATTGTCTAAATTGCCTAAGCCTATTTTTATTGCTCCTATTGTGAAACCTATGGTAGAGTCACCAACTGTTGCACTTGCACGGGCAACCCCTGACTCTGCAAAAAGAATGCAGGGGTCACATCAATCAAAGCAACAGTTTCTGATGGTAGAAGCCTCACCAAAACTTAAAGCTAGACATGATTTGACTCCACCACCTGCAGTTGTCAAACAAGTAGATGGAGATGTTCCTCCCAGGCCAAGACAAAGGACTCCCCCAAGCTTACTTAGACGACCTTCATTTTCTGGAAGGATGAGGCTGGTTGGAATTGATGTTTCAAATGCAGCAAATGATACTGGAAAGCTAGGCACAGATAAAATAGTTCAGGAACATGAGATGAGCCCTTCTCAGTTGGCTGACGACAATGTACCACCAAGTATTTCGAGACAGGTTACTAGAGAGCCCCTGAAGGTTTTTGAAAGAAGTTCAAGAGGAATGCAAACAGATAGCAGCAATTCTGCTTCGTCTTCGGTTTCTATCCGAGGTGAACTTGCTGATGATGCCACAACTTTTATTGACATGAAAGAACAGATGCTTCCTGGACATTCGAATGTAAGCCACATTGGAGGTGTGGAATCATGTCCTGACAGCAGCCCGCTGAATACTTGTGCACATTGTAAGGTGGTTGAAAATGTTCCTGAAGATTCATGTGAGATTGCCATGAATTTTCACAATACTATAAGCAGTAATGAGAAAGTGAATTCCAGTTTAAGTCAAGATCACCATGTTGAAGATTCTAAGGTAGCACTGGCTTCAGAAAGGGGTCTTCTTAAATCCCAGCCAACTATGTCTACTACTACTTCTGGCTGTGATGATGGATCTGTTGATCACTCTGCTGGAGCCACCAATGAAATCAAAGATTTTCAAGATATTACCAAGGAAATGCCTTTGGCCAAGTCTACGAAACACGCATCCCCAAGTTCTGGAGAAAAGTCTGTTCACACAGAAGTTAGTCCAGAAAGTGAACCCGAACTCCTTATTCAGCCAGCACTTGGATGTAAGTCCCCTGGTGATGACAAATTCACAGTGAGAGAGAGACTGTCACCTGTCGTTGAAACTGTTCCTCTGGTTACCCCTACTAAATTATCAAGCCAGAAAGTTTTGCAAGAGAAAGGAACTGTGCTGCAGAGTCCAGCACCAGAAAGGCCTGATACTGGCCATCTTCCTCCAGCTTTTGATGATGTTATCCATGTCATACGTCATAGTAGTTACCGCGTTGGCAGTGATCAGCCAGTGAAGGAATCTGTGGAGATGGGAGTTCAAAATGTAGATGTTGGTAAGTTTATCAATGTTGTGAGGGATGATTTAGAAATGAGGAACATAACGTCACCTTTGACTCTCAAATCTTCAAGTTGCTCTGATGTTACAAGCTTGAAATCTGACCAGTTGGAAATGAAAAACTTAAACACTCCTCCTATCCTTAAATCTTCAAGTTTCTCAGAATCAAGCAATTCTGATCATCCTGGTCTTAAGGAGCAAGATGTGAGTAACCCTCCTCCACTAGTTTCAGAACCTGAATCTACTGAGCTCAGTAAAAGTAACACTCCTGGGAATGAAGAGAAACCACCAGCAAAGGAAACATTGGATGTGAAATCTTTCAGACAGAGAGCAGAGGCACTTGAAGAGCTCTTGGAGTTGTCTGCAGAGTTGCTGCAGCAAAACAGATTGGAGGAACTTCAAGTTGTTCTGAAGCCTTTTGGGAAAGATAAGGTCTCCCCAAGGGAGACAGCCATATGGTTAGCCAAGAGTCTCAAAGGAATGATGTCTGAGGAAAGTGGGGGACGCTCTTCATAA 2802 0.4247 MKKLNGAYFPEEKLCKWFTQLLLAVEYLHSNFVLHRDLKCSNIFLTKDQDVRLGDFGLAKTLKADDLASSVVGTPNYMCPELLADIPYGFKSDIWSLGCCIYEMAAHRPAFKAFDMAGLISKINRSSIGPLPPCYSPSLKTLIKGMLRKNPEHRPTASEVLKHPYLQPYVDQYRPAFSPPSTCSPEKSISTVNYPRKNMAESQNSNSSNSDKDSLMSNEKSIATAVPKCENKATEMDQTSLDDDGSEEESGSRNANGNTKTAEQEAMKPSHNAHHSPVESKQPKTIRNIMMALKEGKVREATSPMRGNRVKPGGVSTQKISTETLSKLPKPIFIAPIVKPMVESPTVALARATPDSAKRMQGSHQSKQQFLMVEASPKLKARHDLTPPPAVVKQVDGDVPPRPRQRTPPSLLRRPSFSGRMRLVGIDVSNAANDTGKLGTDKIVQEHEMSPSQLADDNVPPSISRQVTREPLKVFERSSRGMQTDSSNSASSSVSIRGELADDATTFIDMKEQMLPGHSNVSHIGGVESCPDSSPLNTCAHCKVVENVPEDSCEIAMNFHNTISSNEKVNSSLSQDHHVEDSKVALASERGLLKSQPTMSTTTSGCDDGSVDHSAGATNEIKDFQDITKEMPLAKSTKHASPSSGEKSVHTEVSPESEPELLIQPALGCKSPGDDKFTVRERLSPVVETVPLVTPTKLSSQKVLQEKGTVLQSPAPERPDTGHLPPAFDDVIHVIRHSSYRVGSDQPVKESVEMGVQNVDVGKFINVVRDDLEMRNITSPLTLKSSSCSDVTSLKSDQLEMKNLNTPPILKSSSFSESSNSDHPGLKEQDVSNPPPLVSEPESTELSKSNTPGNEEKPPAKETLDVKSFRQRAEALEELLELSAELLQQNRLEELQVVLKPFGKDKVSPRETAIWLAKSLKGMMSEESGGRSS 933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1463g00001 933 SMART serkin_6 1 166 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1463g00001 933 MobiDBLite consensus disorder prediction 634 669 - -
Vium1463g00001 933 Coils Coil 870 896 - -
Vium1463g00001 933 MobiDBLite consensus disorder prediction 476 497 - -
Vium1463g00001 933 MobiDBLite consensus disorder prediction 836 856 - -
Vium1463g00001 933 FunFam Serine/threonine-protein kinase Nek5 1 239 - -
Vium1463g00001 933 ProSiteProfiles Protein kinase domain profile. 1 166 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1463g00001 933 Gene3D Transferase(Phosphotransferase) domain 1 1 247 - -
Vium1463g00001 933 MobiDBLite consensus disorder prediction 805 827 - -
Vium1463g00001 933 MobiDBLite consensus disorder prediction 267 281 - -
Vium1463g00001 933 SUPERFAMILY Protein kinase-like (PK-like) 6 210 IPR011009 -
Vium1463g00001 933 MobiDBLite consensus disorder prediction 382 415 - -
Vium1463g00001 933 MobiDBLite consensus disorder prediction 251 266 - -
Vium1463g00001 933 MobiDBLite consensus disorder prediction 805 866 - -
Vium1463g00001 933 MobiDBLite consensus disorder prediction 177 283 - -
Vium1463g00001 933 MobiDBLite consensus disorder prediction 479 497 - -
Vium1463g00001 933 MobiDBLite consensus disorder prediction 177 221 - -
Vium1463g00001 933 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 492 - -
Vium1463g00001 933 Pfam Protein kinase domain 8 166 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1463g00001 933 ProSitePatterns Serine/Threonine protein kinases active-site signature. 33 45 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1463g00001 Vium-Chr1463 4089 9849 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1463g00001 9 177 MAP Kinase Kinase Kinase AT3G06030 35.632 2.89e-28 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Vium1463g00001 Pkinase 3.8e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1463g00001 K08857 - gmx:100818747 1437.94