Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1462g00003 ATGCCTCAAACGGCTCCTACCGGAGAACCCTCCCACGGAGGCTCCGGTGGCCGCATGGTGGTAGTGGGGGTGAAGATGGACTCCCCCAGCAAGGAATTGCTCACGTGGGCTTTGGTTAAAGTGGCTCACCCTGGTGACACCGTGGTTGCTCTGCATGTTCTTGGGAACCAGGAAACTGTGAATGGAGACGGGAAATCTTCGCTGCTTTCGCTTGTCAAGGCGTTTGACTCTGTTCTTGCCGTTTATGAAGGATTCTGTAACTTGAAACAGGTCGACCTCAAACTCAAAATTTGCCGTGGTTCATCAGTGAAGAAAATTTTGGTTCGAGAAGCAAATGGTTACACGGCAACTCATGTTGTGGTCGGAACAACTCATGGTTTGCATAGAATCCGGTCATCTACTTTTATAGCTAAATACTGTGCTAAAAAGTTGTCCAAGGATTGCTGTATTCTCGCTGTTAACAATGGGAAAGTTGTGTTCAAGCGTGAGAGCTCGCCACCGAGTGTTGACTTACAAGGGATTGATCGTCAGCACAGAAATGGTTTGATCGGTTCGATTCATTGGACACTCAGTAAGAATACAAAAGTTCTAAGTGATGACAATTCAGGGACGGATGCTGATGAGAAGAAACCTGGCCAAAGTTCAGATCACAGTTTAGCTAAGTTTTTCCTAGATTCTACAGAAACTGTTAGAAAACCGAACTGTTCAATTTGTGGCACAACCTTGGCATTGCCAGACCCTTCTTGCAACCAATCTGAAGAAGGGTTTTCTGGTGATGATGGTAAAGAGAATTCCTTGGCTATAGTACCAGTGCAAGTGCAACCTACTGTTGCTGCAGAAACGGAATTGAAACCTGGTTGGCCACTACTACATCGGAGAATTATATCGGACACACAATCTACTGATAGATCATTGATGCACCCCAAGATTTCCGTGGTCCAGTGGGCAATGAGGTTACCTTCTAGAAATATTTCATATGCTTCAGATCGTGATGAAAAACCTGAAAGTTGTGATCAAAGCCTGGATCAACCTGCGGCTTTAGATAGGGAAAGTGGTGCTCTTGTTCCAATAGATTCTGAAATCGGAACTGCTTCTTCGCCAGAAAGCAATTCAAGAAACATTCCTAAAGAATTGGAGGGCCTTCACGAGAAGTACTCCTCAACTTGTAGATTGTTTGGGTACCAAGATCTTGTATCTGCCACATCAAATTTCTTACCGGAAAACTTTATTGGGAAAGGAGGAAGCAGTCAGGTTTTTAGAGGCTGCCTTTCTGATGGCAAGGAACTTGCTGTCAAGATTCTAAAGCCTTCCGAAGATGTATTGAAGGAATTTATTCTGGAAATCGAAATCATCACTACCTTGCATCACAAAAACATAATTTCCCTCCTGGGATTCTGCTTTGAGAATGGCAAATTTCTTCTGGTTTATGATCTCTTATCAAGGGGAAGTCTTGAAGAGAATCTTCATGGTAATAAGAAAAAATCACTTGCGTTTGGTTGGTCGGAGAGATATAAGGTAGCTGTGGGTATTGCTGAGGCTTTAGATTATCTGCATTCTAAAGACGATCAACCCGTGATCCATCGGGATGTAAAGTCATCGAATGTGTTATTATCCGAGGATTTTGAACCCCAGCTCTCTGATTTTGGACTGGCAAAATGGGCATCAACCTCGTCATCACAAATAACCTGCACAGATGTTGCTGGAACCTTTGGTTACTTGGCTCCTGAATACTTCATGTACGGCAAAGTAAATGATAAGATTGATGTTTATGCATATGGGGTGGTGCTCCTCGAACTTCTTTCGGGGAGAAGGCCCATAAACCGTGATTATCCTAAAGGCCAAGAGAGTCTTGTCATGTGGGCAGGTCCAATTCTAAATAGTGGAAAGGTGTTACAATTGTTAGATCCTAGTTTGGGTGATAACTATGATCATGAGGAGATGGAAAAGATGGTGTTGGCAGCCACACTGTGTATCAAACGTGCTCCAAGGGCTAGGCCTCAAATGAACCTTATCTTAAAGCTCCTTCAAGGTGACATTGAAACAATGAAGTGGGCAAGGTTAGAAGTTAACAATGGTTTGGATGCAGCAGAAACGGTTGATGATGAAGCGTGTCCACCTAGTGATAATCTGCAGTCACATATAGATCTTGCACTGCGTGATGTGGTGGAGGAGTCACTCTCCATGTGCAGTGTTGAGCAGGGTTTGACATTGGAGGACTACTTGAGAGGCCGTTGCAGCCGTGCATCAAGCTTTGACTGA 2259 0.4409 MPQTAPTGEPSHGGSGGRMVVVGVKMDSPSKELLTWALVKVAHPGDTVVALHVLGNQETVNGDGKSSLLSLVKAFDSVLAVYEGFCNLKQVDLKLKICRGSSVKKILVREANGYTATHVVVGTTHGLHRIRSSTFIAKYCAKKLSKDCCILAVNNGKVVFKRESSPPSVDLQGIDRQHRNGLIGSIHWTLSKNTKVLSDDNSGTDADEKKPGQSSDHSLAKFFLDSTETVRKPNCSICGTTLALPDPSCNQSEEGFSGDDGKENSLAIVPVQVQPTVAAETELKPGWPLLHRRIISDTQSTDRSLMHPKISVVQWAMRLPSRNISYASDRDEKPESCDQSLDQPAALDRESGALVPIDSEIGTASSPESNSRNIPKELEGLHEKYSSTCRLFGYQDLVSATSNFLPENFIGKGGSSQVFRGCLSDGKELAVKILKPSEDVLKEFILEIEIITTLHHKNIISLLGFCFENGKFLLVYDLLSRGSLEENLHGNKKKSLAFGWSERYKVAVGIAEALDYLHSKDDQPVIHRDVKSSNVLLSEDFEPQLSDFGLAKWASTSSSQITCTDVAGTFGYLAPEYFMYGKVNDKIDVYAYGVVLLELLSGRRPINRDYPKGQESLVMWAGPILNSGKVLQLLDPSLGDNYDHEEMEKMVLAATLCIKRAPRARPQMNLILKLLQGDIETMKWARLEVNNGLDAAETVDDEACPPSDNLQSHIDLALRDVVEESLSMCSVEQGLTLEDYLRGRCSRASSFD 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1462g00003 752 CDD USP_Like 20 153 - -
Vium1462g00003 752 PANTHER OS08G0249100 PROTEIN 78 683 IPR046958 -
Vium1462g00003 752 CDD STKc_IRAK 410 677 - -
Vium1462g00003 752 SUPERFAMILY Protein kinase-like (PK-like) 385 677 IPR011009 -
Vium1462g00003 752 FunFam Putative receptor-like serine/threonine-protein kinase 479 691 - -
Vium1462g00003 752 MobiDBLite consensus disorder prediction 327 349 - -
Vium1462g00003 752 Gene3D Transferase(Phosphotransferase) domain 1 479 694 - -
Vium1462g00003 752 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 17 154 - -
Vium1462g00003 752 Gene3D HUPs 18 154 IPR014729 -
Vium1462g00003 752 Gene3D Phosphorylase Kinase; domain 1 368 478 - -
Vium1462g00003 752 MobiDBLite consensus disorder prediction 201 215 - -
Vium1462g00003 752 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 373 478 - -
Vium1462g00003 752 Pfam Protein kinase domain 408 669 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1462g00003 752 ProSitePatterns Protein kinases ATP-binding region signature. 410 432 IPR017441 GO:0005524
Vium1462g00003 752 Pfam Universal stress protein family 20 148 IPR006016 -
Vium1462g00003 752 SMART serkin_6 404 675 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1462g00003 752 MobiDBLite consensus disorder prediction 198 218 - -
Vium1462g00003 752 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 20 129 - -
Vium1462g00003 752 ProSiteProfiles Protein kinase domain profile. 404 685 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1462g00003 752 ProSitePatterns Serine/Threonine protein kinases active-site signature. 525 537 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1462g00003 Vium-Chr1462 24939 38793 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1462g00003 310 671 Trihelix Transcription Factor Family AT1G68690 37.228 2.79e-70 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vium1462g00003 Pkinase 2.4e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1462g00003 - - pcin:129303222 1018.45