Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14620g00002 ATGGAAAATGAAGGCTGGAGTAGGTGTTCTTGCTCTGCACGTAGTCTGATATCAATATTGTCTACAATTATTCTCCTACTCCAACCAGATAACTGCCTCGCTAAGCGACACCCACCATGTCCTACTTCATCATGCGGTCAAATTCGTAACATAAGTTATCCATTTCGGCTGAAAGGCGACCCAGGTCGGTGCGGCGACCCAAGGTATGAGTTAGATTGCGTTAACAACGCCACTCTCTTATTAACCTTTTCATCGGCAAAATACCATGTACGAGAGATCGACTACAACGGATACAAAATCGTTCTTAGGGACCCAGGTCAGGACGAGGACGCTAATTGCTCTTTAATCCCTCGCAATTTCATAGCGGCTCCTAGTTACCCGTTCTCGGTTGGCCCAGATAATTTCGGATCGGAGCCGTTCACTTGGGAACACTGGTCTACTATCGGAATAGGGTACTTCAACTGCTTGAATCCTGTGAGTGACGATCCACGATATGTTAAGGTGGACAGGGGTGGATGTGGCAGCAGAGGGCACGTGTACGCGGTATTAGGATCTTCGTATGATCCTAATAGTGGCTACGTTAGTGTTGTTGGTGTGGAGGACATCAAGGTTGGATGCGATCTGATAGTGGCTACGGTTTGGACACCGAAGCAGAATGTTACCTACCACAAGCATGATGAGTCTGACGGCTGGAAGGTTGAAGGGCTTGAAAGAATATCGGAGGGGAATGTTACATATGATGATATCGATCGCAAAATAAGTGAGGGATTTTGGTTGTCGTGGTTGCCGATTGTTTGCGAGGATAAATGTGGAAGGGGGACAGAGTGTCTGCTCATCAATGAATCCAGCGGAGAAGTCTTTTGTAAGAACCATTACTGTCATTACGCTTACCACACCACCCAAAAGTGCGAACCTTGGCAAAAGGTTTTGGGCTATATTCGAGCTTATCTTAGAGGCATTATTTATGGAATAGGTAGCAGAATAACATTCAGTACGAAACAATTGGACAGGCCTGTTGGACTGCAATATTTTGATGGAGGAATATTCATAGGACGACAAATTATATCAATATTTTTGGCAGGCAGATATCTGTTTGGAGTTGTACTTATTCTTGTGTTATTCATCTATAAATGGCGACGAAGACATTCTTCAATATATGGAAATATTGAAAATTTCTTGCTAGATAGTCATCTAAATCCCATCAGATACGAATACAATGAAATAAAAAAAATGACTAAAAGTTTCAAAGTGAAATTGGGTCAAGGAGGCTTTGGTGCTGTGTATAAAGGAAAACTCCGAAGTGGATTAGATGTAGCTGTAAAGATGTTGAGCAAATCCAATGATGATGGACAAGATTTCATAAATGAAGTAGCTACCATCGGAACAATACATCATGTAAATGTGGTGCGGCTTATTGGATATTGTGTTCATAGAAAAAAACGTGCTCTGGTTTATGAATTTATGTCAAATGGATCATTGGATAAGTACATTTTCTCCAAAGAAGAAAGCACCCATTTAAGCTACAAAAAACTATATGAAATATCTTTTGGAATAGCTCGTGGGATTGCATATTTGCATCAAGGTTGTGATATGCAAATTCTGCATTTTGATATCAAGCCTCATAATATTCTTTTAGATGACAACTTTGTTCCAAAGGTTTCAGATTTTGGACTTGCAAAACTACATGCTACAATTGATGGTGTTGTGAATATGACTCTACCAAGAGGAACATTGGGTTATATGGCTCCAGAGTTATATTACAATAATATGGGTGGAGTAACCTATAAAGCTGATGTGTACAGTTTTGGAATGCTTTTGATGGAAATGACAAGTAAGAGAAGGAACTCAAATCCTAATGCCGAGCATTCAAGTCAAAATTATTTTCCTTTTTGGATTTATGACCAATTTAAAACAGAGAAAAACATTGACATGAAAGATGCTTCATCAGAAGAAGAGAAGATTCTAGTTAAAAGGATGTTCTTAATTGCACTTTGGTGTATTCAATTAAATCCAAGTGATCGTCCTTCAATGAACAAGGTAATAGAAATGCTTGAAGGGGTGATTGAAAGGCTTGAATTGCCTCCAAGGCCTTCCTTTTACAATACTGAAGCATACGAACATGATGATATTGGCTCTAATGTCACTGAGTACACTTACTCTACTAGTCAGCATGATGAAAGCATAACATCGGATTCACCGAAGAATATTGAAATAGGCATAAATAGCATAACTTAA 2235 0.396 MENEGWSRCSCSARSLISILSTIILLLQPDNCLAKRHPPCPTSSCGQIRNISYPFRLKGDPGRCGDPRYELDCVNNATLLLTFSSAKYHVREIDYNGYKIVLRDPGQDEDANCSLIPRNFIAAPSYPFSVGPDNFGSEPFTWEHWSTIGIGYFNCLNPVSDDPRYVKVDRGGCGSRGHVYAVLGSSYDPNSGYVSVVGVEDIKVGCDLIVATVWTPKQNVTYHKHDESDGWKVEGLERISEGNVTYDDIDRKISEGFWLSWLPIVCEDKCGRGTECLLINESSGEVFCKNHYCHYAYHTTQKCEPWQKVLGYIRAYLRGIIYGIGSRITFSTKQLDRPVGLQYFDGGIFIGRQIISIFLAGRYLFGVVLILVLFIYKWRRRHSSIYGNIENFLLDSHLNPIRYEYNEIKKMTKSFKVKLGQGGFGAVYKGKLRSGLDVAVKMLSKSNDDGQDFINEVATIGTIHHVNVVRLIGYCVHRKKRALVYEFMSNGSLDKYIFSKEESTHLSYKKLYEISFGIARGIAYLHQGCDMQILHFDIKPHNILLDDNFVPKVSDFGLAKLHATIDGVVNMTLPRGTLGYMAPELYYNNMGGVTYKADVYSFGMLLMEMTSKRRNSNPNAEHSSQNYFPFWIYDQFKTEKNIDMKDASSEEEKILVKRMFLIALWCIQLNPSDRPSMNKVIEMLEGVIERLELPPRPSFYNTEAYEHDDIGSNVTEYTYSTSQHDESITSDSPKNIEIGINSIT 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14620g00002 744 PANTHER RUST RESISTANCE KINASE LR10-RELATED 383 703 IPR045874 GO:0004672
Vium14620g00002 744 SMART serkin_6 413 688 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium14620g00002 744 ProSiteProfiles Protein kinase domain profile. 413 688 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium14620g00002 744 FunFam PR5-like receptor kinase 488 695 - -
Vium14620g00002 744 ProSitePatterns Serine/Threonine protein kinases active-site signature. 533 545 IPR008271 GO:0004672|GO:0006468
Vium14620g00002 744 Gene3D Phosphorylase Kinase; domain 1 393 487 - -
Vium14620g00002 744 SUPERFAMILY Protein kinase-like (PK-like) 398 685 IPR011009 -
Vium14620g00002 744 CDD STKc_IRAK 419 686 - -
Vium14620g00002 744 Gene3D Transferase(Phosphotransferase) domain 1 488 693 - -
Vium14620g00002 744 Pfam Protein tyrosine and serine/threonine kinase 415 684 IPR001245 GO:0004672|GO:0006468
Vium14620g00002 744 ProSitePatterns Protein kinases ATP-binding region signature. 419 441 IPR017441 GO:0005524
Vium14620g00002 744 FunFam serine/threonine-protein kinase PBS1-like 388 487 - -
Vium14620g00002 744 Pfam Wall-associated receptor kinase galacturonan-binding 40 103 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14620g00002 Vium-Chr14620 25322 28930 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14620g00002 402 726 Receptor kinase-like Gene Family AT5G38280 48.943 1.36e-101 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vium14620g00002 PK_Tyr_Ser-Thr 1.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14620g00002 - - gmx:100820366 965.296