Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14620g00001 ATGCTAAATTTTCAAAATCTCGCTCTTGTGCTGACGGTGTTGCTTCTGCTATGGAAGCCTGCCATATGCAAAAATGGGTGCACGGAAAAGTGTGGCTCCATTCACATTCAATTTCCATTTCACCTCAGAAATAGCAAGTTGAATCACACCATGGGCTATCCTCGTGGGTTCGATCTGTTGTGTACGGATGCAGATGAGACTGTGATGGATCTGCCTTCTGTTCCAATAAAATTGTATGTCCAAAGCATAGATTACAAGTCACAGCAAATCCAACTCTACGACCCTCAAAATTGCCTTCCTAGGCAGCTCATGAAGCTCGGCAATTCCTCTATTTCACCATTTCAATTCCTGTCAAATAGGGACCGGGATGTTTCCTTCTTCCGCTGCAACTCAATGTCATGCCCAATTTTGCAACTTGATTCTGAAAATGACATTCTTGATCCCGAGATAGTATCGTGCACAAAGTTGAGTGATGTTTACTCCGTCCAGTGGTATGTACGGGATTATTTGAACAACACCGTGGTTGCGGAATGGACCAGCCCCAATTGCAGTTCCTGTGAAGCACAAGGAAGTAAATGTAGATACAAGAATGGTACCCAAAGTGAAGTTGAATGTTTTGTTTGCCCCACAAACGGGCTTCCAACATCAACTATTGTACTTATCGCAGCAGGGGGATTCGGTGGTTTCCTTCTTGTGCTGCTTTTGGCCAAGGCTTTGTTTCATGTGCATGACCATTATAAGATGAAAGGAGAAGACCAAGCTCGAATAGAGAAATTCTTGGAGGATTACAAGGCAATGAAGCCTACAAGATTCACTTACGCTGACATTAAGAGAATCACAAATGGGTTTAGTGAGAGTTTGGGAGAAGGAGCTCATGGAGCAGTGTTCAAGGGAATGCTCTCCCGCGATATTCTCGTTGCTGTGAAGATACTCAATGACGCTGTTGGAGATGGAAAGGATTTCATAAACGAAGTGGGAACAATGGGCAAAATTCATCATGTTAATGTTGTTCGCTTGCTTGGATTCTGTGCTGATGGATTCCACCGTGCTCTTGTCTATGATTTCTTCCCAAATGGATCACTGCAGAGATTCTTGGCTCCACCAGACAACAAGGATGTTTTCCTTGGTTGGGAGAAGTTGCAACAAATTGCTCTTGGTGTTGCCAAAGGGATTGAGTATCTCCATCTGGGCTGTGATCATAGAATACTTCACTTTGACATCAATCCTCACAATGTTTTGTTAGATGATCACTTCAATCCAAAGATCACTGATTTTGGACTTGCTAAACTGTGTCCTAAAAATCAAAGTACTGTGTCTGTGACTGCAGCCAGGGGAACCTTAGGCTACATTGCCCCTGAAGTTTTCTCAAGAAACTTTGGTAATGTCTCTTATAAGTCTGACATTTACAGCTATGGAATGTTGCTTCTGGAGATGGTAGGAGGAAGAAAGAATACAAATATGTCAGTGGAGGAAAGTTTCCAAGTTCTGTACCCTGAGTGGATCCATAATTTGGTGGAAGCACGAGACGTGGAAGTTACAATTGAGGAGGAGGGAGATGCTAAAATTGCTAGGAAACTTGCCATTATAGGACTTTGGTGTATTCAGTGGAACCCAGTGGACCGTCCATCCATGAAAACTGTGGTACAAATGCTTGAAGGAGATGGAGACAAGTTAATTGCACCCCCTACTCCTTTTGATAAGACCGGTTCCTCAAGAACAAATGCAGCTGTTCAAACAAGACACCAGAATTTCGAGTTGGAAATTATTCATGAAATGGAAGAGTAA 1785 0.4291 MLNFQNLALVLTVLLLLWKPAICKNGCTEKCGSIHIQFPFHLRNSKLNHTMGYPRGFDLLCTDADETVMDLPSVPIKLYVQSIDYKSQQIQLYDPQNCLPRQLMKLGNSSISPFQFLSNRDRDVSFFRCNSMSCPILQLDSENDILDPEIVSCTKLSDVYSVQWYVRDYLNNTVVAEWTSPNCSSCEAQGSKCRYKNGTQSEVECFVCPTNGLPTSTIVLIAAGGFGGFLLVLLLAKALFHVHDHYKMKGEDQARIEKFLEDYKAMKPTRFTYADIKRITNGFSESLGEGAHGAVFKGMLSRDILVAVKILNDAVGDGKDFINEVGTMGKIHHVNVVRLLGFCADGFHRALVYDFFPNGSLQRFLAPPDNKDVFLGWEKLQQIALGVAKGIEYLHLGCDHRILHFDINPHNVLLDDHFNPKITDFGLAKLCPKNQSTVSVTAARGTLGYIAPEVFSRNFGNVSYKSDIYSYGMLLLEMVGGRKNTNMSVEESFQVLYPEWIHNLVEARDVEVTIEEEGDAKIARKLAIIGLWCIQWNPVDRPSMKTVVQMLEGDGDKLIAPPTPFDKTGSSRTNAAVQTRHQNFELEIIHEMEE 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14620g00001 594 ProSitePatterns Protein kinases ATP-binding region signature. 287 309 IPR017441 GO:0005524
Vium14620g00001 594 SUPERFAMILY Protein kinase-like (PK-like) 264 552 IPR011009 -
Vium14620g00001 594 Pfam Protein kinase domain 285 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium14620g00001 594 FunFam serine/threonine-protein kinase PBS1-like 249 355 - -
Vium14620g00001 594 ProSiteProfiles Protein kinase domain profile. 281 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium14620g00001 594 Pfam Wall-associated receptor kinase galacturonan-binding 27 94 IPR025287 GO:0030247
Vium14620g00001 594 Gene3D Transferase(Phosphotransferase) domain 1 356 558 - -
Vium14620g00001 594 PANTHER RUST RESISTANCE KINASE LR10-RELATED 253 570 IPR045874 GO:0004672
Vium14620g00001 594 Gene3D Phosphorylase Kinase; domain 1 255 355 - -
Vium14620g00001 594 FunFam PR5-like receptor kinase 356 561 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14620g00001 Vium-Chr14620 8760 11043 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14620g00001 182 564 Receptor kinase-like Gene Family AT1G66910 42.222 4.16e-102 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vium14620g00001 Pkinase 2.6e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14620g00001 - - gmx:100819302 993.416