Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1458g00013 ATGTCAGACTCACATCTGACTTTCTGTTTTCTTTCTTCCATCCTTGCTCTTATAGTCATCACCTTCATTTTCACCAAAAGAAAGAAACCAACCCTTAATCTTCCCCCTGGCCATACGGGGTGGCCCCTCCTTGGGGAAACCATAGGGTATTTGAGGACTTACCAAGCTCTTAGACTAGGAGAGTTTATGGAGAATCACATAGCAAGGTATGGAACAATTTACAGGTCAAACTTGTTTGGGGAGCCAGCCATAGTGTCAGCAGATGCAGGGCTCAATAGATTCATAATGCAGAACGAAGGGAAGCTGTTCGAGGCTAGTTATCCTAAGAGCCTCGGTGGAGTACTTGGAAAATGGTCTATGTTGGTCATAGTAGGAGACATGCACAGAGACATGAGGAACATATCACTCAACTTTCTCAGCTATTCCAGGGTCCGATTTCATCTATTCAAAGACATCGATTACCATGCCCGTCGTGTTATTTTCTCGTGGAAACATAATTCTACAATATCAGCTCAAAAAGAAGCAAGAAGGTTCACCTTCAATTTAATGGCGAAACAAATCATGAGTTTGGACCCTGGTAAACCGGAGACAGAACAATTGAAGACAGAATACGTCTCTTTCATGAAGGGTGTTGTATCTCTTGTTCCTTTGAATTTGCCCGGAACAGCATACAGAAAGGCAATAAAGGCTAGGTCCACCATTCTGAAGTTCATAGAGGCGAAAATGGAAGAGAGGGCGAAGAGGGTCCAGAAGGGTGAGGCAGTGGAGGAAGAAAATGATCTTCTAAACTGGGTTGTGACTAATACAAACCTTTCAAATGAGCAAATGCTTGACTTGATATTGAGCTTGCTCTTTGGTGGCCATGAAACCTCGTCGGTAGCCATAGCTCTAGCTATTTACTTCTTGCCGGGTTGTCCTCGAGCTATGCAACAATTGACGGAGGAACACGTGGAAATAGTCACTTCCAAGAAGAAGACAGGGGAGGTTGAATTGACTTGGGATGATTACAAAAAAATGGAGTTTACTCACTGTGTTTTGAACGAAACACTTCGACTAGGGAATGTTGTGAGGTATCTTCACAGGAAGGCTATTAAGGATGTTCGGTACAAAGGTTATGACATTCCACGTGGGTGGAAAGTTCTTCCGGTGATTTCAGCTGCTCATTTCGATCCTCAACACTTTGACCAACCTCACCAATTCAATCCATGGAGATGGCAGGGGAGTAATGGTAAAGCTGATAATAACTTCATGCCATTTGGAGGAGGATCAAGGTATTGTGCAGGGTCAGAGTTAGCGAAGGTGGAAATGGCGGTGTTCATCCACCATCTGATTCTGAACTACAACTGGGAACTTCTGGAAGGTGATGAACCTTTTGTATACCCTTATGTGGATTTCCCCAAAGGTCTACCCATCAAAGTCCAAGCTACATCATCATCCATCTAA 1443 0.4373 MSDSHLTFCFLSSILALIVITFIFTKRKKPTLNLPPGHTGWPLLGETIGYLRTYQALRLGEFMENHIARYGTIYRSNLFGEPAIVSADAGLNRFIMQNEGKLFEASYPKSLGGVLGKWSMLVIVGDMHRDMRNISLNFLSYSRVRFHLFKDIDYHARRVIFSWKHNSTISAQKEARRFTFNLMAKQIMSLDPGKPETEQLKTEYVSFMKGVVSLVPLNLPGTAYRKAIKARSTILKFIEAKMEERAKRVQKGEAVEEENDLLNWVVTNTNLSNEQMLDLILSLLFGGHETSSVAIALAIYFLPGCPRAMQQLTEEHVEIVTSKKKTGEVELTWDDYKKMEFTHCVLNETLRLGNVVRYLHRKAIKDVRYKGYDIPRGWKVLPVISAAHFDPQHFDQPHQFNPWRWQGSNGKADNNFMPFGGGSRYCAGSELAKVEMAVFIHHLILNYNWELLEGDEPFVYPYVDFPKGLPIKVQATSSSI 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1458g00013 480 Gene3D Cytochrome P450 23 475 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1458g00013 480 PRINTS P450 superfamily signature 417 426 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1458g00013 480 PRINTS P450 superfamily signature 426 437 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1458g00013 480 PRINTS P450 superfamily signature 286 303 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1458g00013 480 PRINTS P450 superfamily signature 344 355 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1458g00013 480 SUPERFAMILY Cytochrome P450 32 470 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1458g00013 480 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 419 428 IPR017972 GO:0005506|GO:0016705
Vium1458g00013 480 PRINTS E-class P450 group I signature 426 449 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1458g00013 480 PRINTS E-class P450 group I signature 275 292 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1458g00013 480 PRINTS E-class P450 group I signature 383 407 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1458g00013 480 PRINTS E-class P450 group I signature 295 321 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1458g00013 480 PRINTS E-class P450 group I signature 67 86 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1458g00013 480 PRINTS E-class P450 group I signature 416 426 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1458g00013 480 PANTHER CYTOCHROME P450 26 30 457 - -
Vium1458g00013 480 FunFam Cytochrome P450 90B1 24 475 - -
Vium1458g00013 480 Pfam Cytochrome P450 35 457 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1458g00013 480 CDD CYP90-like 66 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1458g00013 Vium-Chr1458 123175 127283 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1458g00013 26 411 Cytochrome P450 AT3G50660 65.848 0.0 566
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1458g00013 K09587 - gmx:100800210 754.207