Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1458g00003 ATGCATCGTTGTTGCGGGAACTCCCAGGGTCACGTGATGGGCACCTGCACATGCACCATGCTTCACACCGAAACTAACTCTTACTCCATCCTCTTTTCTATGCCCAACACCCACGCTCCCTATTATGATTACGAACACGAAGTCTACTCCTCCTACACGCCCTCTCCTTCTTCCGTCGACTGCACGCTCTCCCTCGGTACCCCTTCCACACGTTTCACCGAAGGCGAGGAGTTACGGAACCGCCACGAACCTCGCTCTTCCGTCACCAACTTCAGCTGGGACTTGCTGCAATCCAAACACACCACGCAATCTCAAACCAATAAATCAACCAGAGCAACCAATGCCGCCTCCAACAACGACCCTCTCCTCGCTCGTCGCTGCGCCAACTGCGACACCACTTCTACTCCCCTATGGAGAAACGGCCCTCGTGGCCCAAAGTCACTATGCAATGCTTGTGGGATCAGATATAAGAAGGAAGAGAGAAGAGCATCGGCTGCCGCCGCCACGTCTGCGGCGGTTCCCGGCAGCGTAATGGAATCATCTCGCTCGTACGGCAACCAAAGCAGTTCGTGGTACTCACACTCGCAGATGGGGAACGAGTTACGTTTCATGGAGGATTCCGACGATAGAGATTCGGAGAACGGCATTCCGTTCTTCTCTTGGAACCTTAACGTTCCAGACCGAACGAGAATGGTGCACGACTACACGAGATGA 714 0.542 MHRCCGNSQGHVMGTCTCTMLHTETNSYSILFSMPNTHAPYYDYEHEVYSSYTPSPSSVDCTLSLGTPSTRFTEGEELRNRHEPRSSVTNFSWDLLQSKHTTQSQTNKSTRATNAASNNDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEERRASAAAATSAAVPGSVMESSRSYGNQSSSWYSHSQMGNELRFMEDSDDRDSENGIPFFSWNLNVPDRTRMVHDYTR 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1458g00003 237 Gene3D - 123 187 IPR013088 GO:0006355|GO:0008270
Vium1458g00003 237 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 124 163 - -
Vium1458g00003 237 CDD ZnF_GATA 126 158 IPR000679 GO:0006355|GO:0043565
Vium1458g00003 237 ProSiteProfiles GATA-type zinc finger domain profile. 121 157 IPR000679 GO:0006355|GO:0043565
Vium1458g00003 237 ProSitePatterns GATA-type zinc finger domain. 127 152 IPR000679 GO:0006355|GO:0043565
Vium1458g00003 237 PANTHER GATA TRANSCRIPTION FACTOR 18 11 237 IPR044272 GO:0003700|GO:0009908
Vium1458g00003 237 Pfam GATA zinc finger 127 161 IPR000679 GO:0006355|GO:0043565
Vium1458g00003 237 SMART GATA_3 121 174 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1458g00003 Vium-Chr1458 19056 21009 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1458g00003 5 237 C2C2-Gata Transcription Factor Family AT3G50870 39.860 3.14e-52 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vium1458g00003 GATA 6.5e-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1458g00003 - - gmx:100799154 299.286