Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14561g00005 ATGGACTCGCGCACGTATAATCCACGCACGGTCGAAGAGGTTTTTAGGGATTTCAAGGGCCGAAGAGCTGCTCTCATCAAAGCCCTTACCACTGATGTTGAAGATTTCTACAACCAATGTGATCCAGAGAAGGAGAATCTGTGCTTGTATGGCTTTCCCAGTGAACAGTGGGAAGTAAATTTACCTGCTGAAGAAGTACCACCTGAGCTTCCTGAGCCTGTGCTGGGCATCAACTTTGCTAGGGATGGCATGCAAGAAAAAGACTGGCTATCTTTAGTTGCTGTCCATAGTGATGCATGGTTACTTGCTATTGCATTCTATTTTGGAGCCAGATTCGGGTTTGATAAAGCTGACAGGAAACGACTTTTCAACATGATCAACGAATTGCCAACAATATTTGAAGTTGTTACTGGTGCAGCAAAGAAGCAAGTTAAGGAGAAGTCTTCTGTTTCAAACCACAGTGGCAGCAAGTCTAAGTCCAGCTCTAAGGCACAACGAGCTCCAGATTCTCAGAGTAGACAGTCAAAGCCATCGCAACCAAAAGAAGAGGATGAAGAACTGGATGAACAAGATGATGATGAACATGGAGAGACCTTGTGTGGGGCATGTGGTGAGCATTATGGCACTGATGAATTCTGGATTTGCTGTGACATATGTGAGAAATGGTTCCATGGTAAATGTGTGAAGATTACACCAGCTAGGGCAGAGCATATCAAACAATACAAGTGTCCCTCATGCAGTAACAAGAGAGCTCTCCCCTGA 762 0.4475 MDSRTYNPRTVEEVFRDFKGRRAALIKALTTDVEDFYNQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDAWLLAIAFYFGARFGFDKADRKRLFNMINELPTIFEVVTGAAKKQVKEKSSVSNHSGSKSKSSSKAQRAPDSQSRQSKPSQPKEEDEELDEQDDDEHGETLCGACGEHYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRALP 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14561g00005 253 ProSiteProfiles Zinc finger PHD-type profile. 197 249 IPR019787 -
Vium14561g00005 253 FunFam PHD finger alfin-like protein 192 248 - -
Vium14561g00005 253 CDD PHD_AL_plant 199 249 IPR044104 -
Vium14561g00005 253 SUPERFAMILY FYVE/PHD zinc finger 189 250 IPR011011 -
Vium14561g00005 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 248 IPR013083 -
Vium14561g00005 253 PANTHER CPG BINDING PROTEIN 7 251 IPR045104 GO:0006355|GO:0042393
Vium14561g00005 253 SMART PHD_3 199 247 IPR001965 -
Vium14561g00005 253 MobiDBLite consensus disorder prediction 144 193 - -
Vium14561g00005 253 ProSitePatterns Zinc finger PHD-type signature. 200 246 IPR019786 -
Vium14561g00005 253 MobiDBLite consensus disorder prediction 149 175 - -
Vium14561g00005 253 Pfam PHD-finger 200 249 IPR019787 -
Vium14561g00005 253 Pfam Alfin 10 138 IPR021998 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14561g00005 Vium-Chr14561 13771 18508 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14561g00005 6 251 Alfin-like Transcription Factor Family AT3G42790 76.829 1.45e-126 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Vium14561g00005 Alfin 8.3e-69 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14561g00005 K26274 - gmx:100170700 471.47