Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14561g00004 ATGGACTCGCGCACGTATAATCCACGCACGGTCGAAGAGGTTTTTAGGGATTTCAAGGGCCGAAGAGCTGCTCTCATCAAAGCCCTTACCACTGATGTTGAAGATTTCTACAACCAATGTGATCCAGAGAAGGAGAATCTGTGCTTGTATGGCTTTCCCAGTGAACAGTGGGAAGTAAATTTACCTGCTGAAGAAGTACCACCTGAGCTTCCTGAGCCTGTGCTGGGCATCAACTTTGCTAGGGATGGCATGCAAGAAAAAGACTGGCTATCTTTAGTTGCTGTCCATAGTGATGCATGGTTACTTGCTATTGCATTCTATTTTGGAGCCAGATTCGGGTTTGATAAAGCTGACAGGAAACGACTTTTCAACATGATCAACGAATTGCCAACAATATTTGAAGTTGTTACTGGTGCAGCAAAGAAGCAAGTTAAGGAGAAGTCTTCTGTTTCAAACCACAGTGGCAGCAAGTCTAAGTCCAGCTCTAAGCAACGAGCTCCAGATTCTCAGAGTAGACAGTCAAAGCCATCGCAACCAAAAGAAGAGGATGAAGAACTGGATGAACAAGATGATGATGAACATGGAGAGACCTTGTGTGGGGCATGTGGTGAGCATTATGGCACTGATGAATTCTGGATTTGCTGTGACATATGTGAGAAATGGTTCCATGGTAAATGTGTGAAGATTACACCAGCTAGGGCAGAGCATATCAAACAATACAAGTGTCCCTCATGCAGTAACAAGAGAGCTCTCCCCTGA 759 0.4466 MDSRTYNPRTVEEVFRDFKGRRAALIKALTTDVEDFYNQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDAWLLAIAFYFGARFGFDKADRKRLFNMINELPTIFEVVTGAAKKQVKEKSSVSNHSGSKSKSSSKQRAPDSQSRQSKPSQPKEEDEELDEQDDDEHGETLCGACGEHYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRALP 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14561g00004 252 PANTHER CPG BINDING PROTEIN 7 250 IPR045104 GO:0006355|GO:0042393
Vium14561g00004 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 189 247 IPR013083 -
Vium14561g00004 252 MobiDBLite consensus disorder prediction 144 192 - -
Vium14561g00004 252 SUPERFAMILY FYVE/PHD zinc finger 188 249 IPR011011 -
Vium14561g00004 252 ProSitePatterns Zinc finger PHD-type signature. 199 245 IPR019786 -
Vium14561g00004 252 SMART PHD_3 198 246 IPR001965 -
Vium14561g00004 252 Pfam PHD-finger 199 248 IPR019787 -
Vium14561g00004 252 CDD PHD_AL_plant 198 248 IPR044104 -
Vium14561g00004 252 MobiDBLite consensus disorder prediction 149 174 - -
Vium14561g00004 252 Pfam Alfin 10 138 IPR021998 GO:0006355|GO:0042393
Vium14561g00004 252 ProSiteProfiles Zinc finger PHD-type profile. 196 248 IPR019787 -
Vium14561g00004 252 FunFam PHD finger alfin-like protein 191 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14561g00004 Vium-Chr14561 13771 18508 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14561g00004 6 250 Alfin-like Transcription Factor Family AT3G42790 77.551 3.15e-127 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Vium14561g00004 Alfin 8.2e-69 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14561g00004 K26274 - gmx:100170700 474.552