Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14561g00001 ATGAGCATGAGAATGGCAGAGGAAGAATCTAGCGAGGAGGTTCATGTTCCGGGTGAGATTGATTGGCAAATGCTTGATAAATCCAAGTTCTTCTTCCTTGGTGCTGCTCTTTTCTCTGGGGTTTCTGCAACCCTTTACCCTGTTGTTGTGTTGAAGACTAGGCAGCAAGTGGCACAGTCCCAAGTGTCTTGCATCAACACTGCATTTTCGTTGATCAAGGGTGAGGGTTTTAGAGCATTGTACCGTGGGTTTGGGACTTCTTTGATGGGTACAATCCCTGCCAGGGCTCTTTACATGGCTGCATTAGAGGTTACCAAAAGCAATGTGGGCACGGCCACTGTTAGGTTTGGTCTTGGTGAACCCACTGCTTCTGCAGTTGCCAATGCAGCTGCGGGCTTGAGTGCAGCCATGGCAGCTCAGCTTGTGTGGACCCCTGTTGATGTTGTGAGCCAGAGGTTGATGGTTCAAGGCTGTTGTGATTCTAAAAATCCAAAGGCTTCGGCATTTCGGTACATCAATGGGATTGATGCCTTCAGGAAGATATTGAGCAATGATGGCCTTAGGGGCTTGTATAGGGGTTTTGGGATCTCAATTTTGACCTATGCCCCTTCAAACGCAGTTTGGTGGGCTTCATATTCTGTTGCACAAAGGATGGTCTGGGGTGGAGTTGGGTACTACTTGAGCAAGGGCAATGATAATGCAACTAACAGTGCTTTGAGGCCTGATACAAAAACCATGATGGCAGTTCAGGGAGTCAGTGCAGCAGTGGCTGGTGGCATGTCTGCTTTGATCACCATGCCACTGGACACCATCAAGACAAGACTGCAGGTCTTGGATGGCGACGAGAACGGCCGTCGTGGACCCACCATTATGCAGACAGTGAGGAGTCTGGTCAGGGAAGGTGGTTGGATGGCTTGTTACCGAGGATTGGGTCCTAGGTGGGCATCTATGTCAATGTCTGCAACAACAATGATAACTACTTATGAGTTCCTCAAACGGCTCTCAGCGAAGAACCAAGAGGTTTTAACATAA 1032 0.4884 MSMRMAEEESSEEVHVPGEIDWQMLDKSKFFFLGAALFSGVSATLYPVVVLKTRQQVAQSQVSCINTAFSLIKGEGFRALYRGFGTSLMGTIPARALYMAALEVTKSNVGTATVRFGLGEPTASAVANAAAGLSAAMAAQLVWTPVDVVSQRLMVQGCCDSKNPKASAFRYINGIDAFRKILSNDGLRGLYRGFGISILTYAPSNAVWWASYSVAQRMVWGGVGYYLSKGNDNATNSALRPDTKTMMAVQGVSAAVAGGMSALITMPLDTIKTRLQVLDGDENGRRGPTIMQTVRSLVREGGWMACYRGLGPRWASMSMSATTMITTYEFLKRLSAKNQEVLT 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14561g00001 343 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 7 340 - -
Vium14561g00001 343 PRINTS Mitochondrial carrier protein signature 191 209 IPR002067 GO:0055085
Vium14561g00001 343 PRINTS Mitochondrial carrier protein signature 83 103 IPR002067 GO:0055085
Vium14561g00001 343 PRINTS Mitochondrial carrier protein signature 31 44 IPR002067 GO:0055085
Vium14561g00001 343 PRINTS Mitochondrial carrier protein signature 254 276 IPR002067 GO:0055085
Vium14561g00001 343 ProSiteProfiles Solute carrier (Solcar) repeat profile. 123 218 IPR018108 -
Vium14561g00001 343 ProSiteProfiles Solute carrier (Solcar) repeat profile. 245 334 IPR018108 -
Vium14561g00001 343 ProSiteProfiles Solute carrier (Solcar) repeat profile. 26 108 IPR018108 -
Vium14561g00001 343 Pfam Mitochondrial carrier protein 248 338 IPR018108 -
Vium14561g00001 343 Pfam Mitochondrial carrier protein 37 108 IPR018108 -
Vium14561g00001 343 Pfam Mitochondrial carrier protein 123 219 IPR018108 -
Vium14561g00001 343 SUPERFAMILY Mitochondrial carrier 23 331 IPR023395 -
Vium14561g00001 343 Gene3D Mitochondrial carrier domain 30 341 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14561g00001 Vium-Chr14561 4408 6293 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14561g00001 1 340 Chloroplast and Mitochondria Gene Families AT1G72820 73.913 0.0 506
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14561g00001 K15121 - gmx:100784616 593.193