Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14556g00001 ATGTGCGGCCATGTCTTCTGTTATGAATGTGTACAGGAATATTTGTCTGGTGATGATAATACGTGCCCTGCTGTAAATTGTAAAAAAACAATCGGTGATGATCTTGTTTACTCAAAAGTTACTTTGAAGAGTTGTATCTATGATGATAGTGGCACTTCTAGTTCTTCAAATTCACATCTAAGTGATTATTCGCTAGTGCAACGGGATAATTACATTTCATCTAAAATCAAAGCTGTTCTTGAGGTTATGCAGTCAAATTGTCAAATAAAAATATCTAATTCTGACTTACAAAACTCTGGATGTTGTAGAGATTCGCCGTCATATTCTATTGATCTAGAGATTGATGACAGTGATTCAGAGGATAGGGTTGCAAAACACACAAGAAAGAATTCAAAGTCCACAACTGAAGGACCGATAAAGGCTATAGTTTTTTCCCAGTGGACTAGCATGTTGGATTTAGTTGAGACATCATTGTGTCAATTTGGTATACTGTACAGGAGACTTGATGGTAGGATGACTCTGGGTGCAAGGGACAAAGCTGTTAGGGATTTCAATACTGAACCTGAGATAACTGTTATGCTGATGTCACTAAAGGCAGGAAACCTTGGATTGAATATGGTTGCTGCTTGTCATGTTATTCTTTTGGATCTGTGGTGGAATCCAACAACTGAAGATCAAGCTATTGATCGAGCCCATAGAATTGGACAAACTCGTCCTGTTACCGTGACAAGGATTACTATAAAAGATACCGTTGAAGATCGGATACTGTCTCTACAGGAGGATAAGAGAGAAATGGTTGCATCTGCTTTTGGGGAAGACCATGCTGGTAGGTCTGGAACTCGCCTTACAGTGGATGATCTGAAATATCTCTTCATGGTCTAG 882 0.39 MCGHVFCYECVQEYLSGDDNTCPAVNCKKTIGDDLVYSKVTLKSCIYDDSGTSSSSNSHLSDYSLVQRDNYISSKIKAVLEVMQSNCQIKISNSDLQNSGCCRDSPSYSIDLEIDDSDSEDRVAKHTRKNSKSTTEGPIKAIVFSQWTSMLDLVETSLCQFGILYRRLDGRMTLGARDKAVRDFNTEPEITVMLMSLKAGNLGLNMVAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKDTVEDRILSLQEDKREMVASAFGEDHAGRSGTRLTVDDLKYLFMV 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14556g00001 293 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 2 292 - -
Vium14556g00001 293 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 112 292 IPR027417 -
Vium14556g00001 293 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 118 288 IPR001650 -
Vium14556g00001 293 Pfam Helicase conserved C-terminal domain 138 235 IPR001650 -
Vium14556g00001 293 SUPERFAMILY RING/U-box 2 41 - -
Vium14556g00001 293 Gene3D - 47 292 IPR027417 -
Vium14556g00001 293 CDD SF2_C_SNF 136 244 - -
Vium14556g00001 293 SMART helicmild6 152 235 IPR001650 -
Vium14556g00001 293 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 39 IPR013083 -
Vium14556g00001 293 ProSitePatterns Zinc finger RING-type signature. 2 11 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14556g00001 Vium-Chr14556 7 1680 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14556g00001 1 293 RAD5 or RAD16-like Gene Family AT1G61140 54.849 1.55e-92 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14556g00001 - - vum:124822621 554.673