Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14540g00001 TACATAAGGTTCCGCAGAAGCATCCCTCTTGAACTTACCAACAGAAGGAGCCCTGATTCACCAAATTTTCAAGCACAAACACAATCAAGATCAAGACATTCAGGGATAGACAGGAAAGTGATTGAAGCACTCCCATTTTTCATGTTCTCTTCCCTTAAGGGGTCCAAACAAGGCCTAGAGTGCACAGTTTGCTTGTCACAGTTTGAGGACACTGAGATTCTTAGGCTCTTGCCAAAGTGCAAACATGCTTTCCACATGAATTGCATTGACAAGTGGTTAGAAAGTCACTCTACATGCCCTCTTTGCAGGAATAATATTGACCCCTTAGACATCAAGAACTTCACCTACTCAATCAGTTCAAGGTCCCTAAGAGTTCCTTCAAATTTAACCGATGACACTAACCTTGAAATCTTAGTACACAGGGAACCTTCTTCCCATCAAGGCTCATCATCATCATCAAGGTTTAACATCGGAAGCATGTTTTGGAATTTGGGTTGGAGCAACAAGAAAAACCTTCTCGTTGACCAAGAGGTATGTGGAACAAATGGGACACACGTGCACAAGTTCTATCACAAAATTGTTGTCTCTGATGTTGTTAGAAGAAGCAGGTGGAGTGATCTTAACTCTTCGGACATATTATCATTGAAGAGTGAGATGATTCATCATGTTTCAATTGGAAGATTCTCTCCCTCTAATGAAACTTTTTGTGGAAATCCGAGCCTTTCCTCTATTTTCAACGAGGATGAAAGTTCATTTACGTTATTGAATATAGCTCAGAAGAGATCTATGTCTGATATTGCTCATATTCCAAGGTTGATAGAAACATGCAAGCAGAATAAAATGGAACCAGGTGAGGCATCAAGTGGGAATAACGAGAGGGAGGAGAGGATGAGAAGGATTTGGTTGACAATTGCTCAACGAACAGTGCAATGGTTTGCAGGACAAGAAAGAAATTCAACAGATTTAGAGATAAAACATTTAGCTTCGGATGTTTGA 996 0.4036 YIRFRRSIPLELTNRRSPDSPNFQAQTQSRSRHSGIDRKVIEALPFFMFSSLKGSKQGLECTVCLSQFEDTEILRLLPKCKHAFHMNCIDKWLESHSTCPLCRNNIDPLDIKNFTYSISSRSLRVPSNLTDDTNLEILVHREPSSHQGSSSSSRFNIGSMFWNLGWSNKKNLLVDQEVCGTNGTHVHKFYHKIVVSDVVRRSRWSDLNSSDILSLKSEMIHHVSIGRFSPSNETFCGNPSLSSIFNEDESSFTLLNIAQKRSMSDIAHIPRLIETCKQNKMEPGEASSGNNEREERMRRIWLTIAQRTVQWFAGQERNSTDLEIKHLASDV 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14540g00001 331 CDD RING-H2_EL5-like 60 103 - -
Vium14540g00001 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 35 110 IPR013083 -
Vium14540g00001 331 SUPERFAMILY RING/U-box 42 109 - -
Vium14540g00001 331 MobiDBLite consensus disorder prediction 13 34 - -
Vium14540g00001 331 SMART ring_2 61 102 IPR001841 -
Vium14540g00001 331 ProSiteProfiles Zinc finger RING-type profile. 61 103 IPR001841 -
Vium14540g00001 331 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 15 317 - -
Vium14540g00001 331 FunFam RING-H2 finger protein ATL43 36 110 - -
Vium14540g00001 331 MobiDBLite consensus disorder prediction 13 31 - -
Vium14540g00001 331 Pfam Ring finger domain 60 103 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14540g00001 Vium-Chr14540 9732 10838 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14540g00001 31 322 C3H Transcription Factor Family AT2G20030 43.831 1.20e-68 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14540g00001 K10664 - gmx:100803881 483.411