Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14538g00003 ATGGATTACACTCACCCTGCTTCATCTGATGCAGGATCCTCTTCAAAGACAAACAGAAGCAAGGAGAAAAAGGGTGCTAAGAAATGCAAAGGAGTGAGGCTCTCCACCGATCCTCAGAGCGTGGCAGCAAGAGAACGAAGGCACAGAATCAGTGACAGGTTCAAGATCTTGCAGAGCATGGTCCCTGGTGGAAGCAAGATGGACACAGTGTCCATGTTGGAGGAAGCCATTCAGTATGTGAAGTACCTCAAAACTCAGATTTGGCTCCACCAAACCATGATCAATTTCTTAGATGATAACGACTCACTCTCCCCTATGTACCTTACTGATTTCTACTTCCCTTCTGACCCTTCTGAACAGTTCATTTTCCCTCAGCAAAATCCACCACTTGATCATAACATGCACAACTTTCCTCATCTTCCACCACCACAATGCAGCTTCCATGGTGAAGACACCACCTACTTCGATGCCTCTTTCAAATATTGGCCAGCTTAA 495 0.4586 MDYTHPASSDAGSSSKTNRSKEKKGAKKCKGVRLSTDPQSVAARERRHRISDRFKILQSMVPGGSKMDTVSMLEEAIQYVKYLKTQIWLHQTMINFLDDNDSLSPMYLTDFYFPSDPSEQFIFPQQNPPLDHNMHNFPHLPPPQCSFHGEDTTYFDASFKYWPA 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14538g00003 164 MobiDBLite consensus disorder prediction 1 42 - -
Vium14538g00003 164 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 34 83 IPR011598 GO:0046983
Vium14538g00003 164 CDD bHLH_AtIND_like 35 94 - -
Vium14538g00003 164 SMART finulus 40 89 IPR011598 GO:0046983
Vium14538g00003 164 Pfam Helix-loop-helix DNA-binding domain 44 84 IPR011598 GO:0046983
Vium14538g00003 164 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 20 151 IPR045843 GO:0003700|GO:0006355
Vium14538g00003 164 Gene3D - 38 92 IPR036638 GO:0046983
Vium14538g00003 164 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 39 95 IPR036638 GO:0046983
Vium14538g00003 164 FunFam Transcription factor LAX PANICLE 37 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14538g00003 Vium-Chr14538 51130 51878 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14538g00003 28 132 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 43.636 2.61e-22 89.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium14538g00003 HLH 1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14538g00003 - - pvu:PHAVU_010G073400g 284.263