Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14510g00001 ATGGGGAAGGGAACAGGGAGTTTCGGTAAAAGGAGTAACAAGACCCACACCCTTTGTGTTAGATGCGGCCGTCGCAGCTTCCACCTCCAGAAGAGTCGGTGTGCTGCTTGTGCTTTCCCGGCAGCGCGCACTAGAAAATATAACTGGAGCGTGAAGGCTATTAGGAGAAAGACCACTGGAACTGNTTTTGTATTGATTTTAATATAA 207 0.4783 MGKGTGSFGKRSNKTHTLCVRCGRRSFHLQKSRCAACAFPAARTRKYNWSVKAIRRKTTGTXFVLILI 68
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14510g00001 68 ProSitePatterns Ribosomal protein L37e signature. 4 23 IPR018267 GO:0003735|GO:0005840|GO:0006412
Vium14510g00001 68 Hamap 50S ribosomal protein L37e [rpl37e]. 2 53 IPR001569 GO:0003735|GO:0005840|GO:0006412
Vium14510g00001 68 Gene3D - 1 65 IPR011331 GO:0003735|GO:0005840|GO:0006412
Vium14510g00001 68 Pfam Ribosomal protein L37e 3 53 IPR001569 GO:0003735|GO:0005840|GO:0006412
Vium14510g00001 68 SUPERFAMILY Zn-binding ribosomal proteins 1 55 IPR011332 GO:0006412
Vium14510g00001 68 PANTHER 60S RIBOSOMAL PROTEIN L37 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14510g00001 Vium-Chr14510 1440 1913 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14510g00001 1 67 Cytoplasmic Ribosomal Protein Gene Family AT1G15250 82.090 4.67e-36 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14510g00001 K02922 - gmx:547747 130.568