Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1450g00007 ATGGAATCACCCAACTCATCCGCCATTTTCCCACAATTCACCCTAGACACCACCAAAAACAATAACCCTGACCACTTCATTGTCGAGGACCTTTTGGATTTCTCCAACGACGATGCTGTAAACGCCGACACCATATTCGATTCGCTCCCTGTCAACTCCACCGACTCTTCCAACGTCACCGCCGTTGATAGCTGCAACTCCTCCTCCTTCTCCGGCTACGACCCCAATACCATTCCGGACATTGGTAGCCGGAGTCTCTCCGATGGTCATTTTTCCGGTGACCTATGCGTACCGTATGATGATATAGCAGAGCTAGAATGGCTTTCGAATTTCGTGGAGGAGTCGTTTTCCAGCGAGGACCTGCAGAAGATGCAGCTGATATCAGGCATGAATGCGAGAAACGACCACGTACCAAAGGCCCGCGGGTTCCACTCCGAGCCCACAAGAAATGGGTTTCATTCAGAGCCCACCCGAAACAACCCGATATTCAATTCGGAAGTGTCGGTCCCAGCCAAGGCCCGTAGCAAAAGGTCCCGCGGGCCTCCATGCAACTGGGCATCGCGCCTCCTCGTCCTGTCCCCAACGACGTCGTCTTCAGACACTGAGGTCGTTGCTCCTGTTTCCACTCATTCCGGCACAAAAAAGCCCGCGAAGGCAACACCGAGAAAGAAGGACAGCGGCGATGGCAGTGGTGGAGACGGACGCAGGTGTCTGCATTGCGCCACGGACAAGACACCACAGTGGCGAACCGGGCCCATGGGTCCAAAGACGCTGTGTAACGCGTGTGGAGTGAGGTACAAGTCGGGGCGGCTGGTGCCCGAGTACAGACCCGCGGCAAGCCCAACGTTTGTTCTGACAAAACACTCGAACTCGCACCGCAAGGTTCTGGAGCTGCGAAGGCAGAAGGAGATGGTGCGGGCCCAACAGCACCAGCAACAACAGTTCCTACAACACCATCATCATCAGAACATGCTGTTAGACGTATCCAACAGTGAAGATTACTTGGTCCACCAACACGTGGGACCCGATTACAGGCAGCTTATCTAG 1047 0.5473 MESPNSSAIFPQFTLDTTKNNNPDHFIVEDLLDFSNDDAVNADTIFDSLPVNSTDSSNVTAVDSCNSSSFSGYDPNTIPDIGSRSLSDGHFSGDLCVPYDDIAELEWLSNFVEESFSSEDLQKMQLISGMNARNDHVPKARGFHSEPTRNGFHSEPTRNNPIFNSEVSVPAKARSKRSRGPPCNWASRLLVLSPTTSSSDTEVVAPVSTHSGTKKPAKATPRKKDSGDGSGGDGRRCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMVRAQQHQQQQFLQHHHHQNMLLDVSNSEDYLVHQHVGPDYRQLI 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1450g00007 348 PIRSF Txn_fac_GATA_plant 8 329 IPR016679 GO:0003677|GO:0005634|GO:0045893
Vium1450g00007 348 PANTHER GATA TRANSCRIPTION FACTOR 18 312 - -
Vium1450g00007 348 MobiDBLite consensus disorder prediction 150 166 - -
Vium1450g00007 348 CDD ZnF_GATA 236 283 IPR000679 GO:0006355|GO:0043565
Vium1450g00007 348 ProSiteProfiles GATA-type zinc finger domain profile. 231 267 IPR000679 GO:0006355|GO:0043565
Vium1450g00007 348 Gene3D - 233 321 IPR013088 GO:0006355|GO:0008270
Vium1450g00007 348 MobiDBLite consensus disorder prediction 218 235 - -
Vium1450g00007 348 MobiDBLite consensus disorder prediction 143 181 - -
Vium1450g00007 348 FunFam GATA transcription factor 227 314 - -
Vium1450g00007 348 Pfam GATA zinc finger 237 270 IPR000679 GO:0006355|GO:0043565
Vium1450g00007 348 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 232 295 - -
Vium1450g00007 348 ProSitePatterns GATA-type zinc finger domain. 237 262 IPR000679 GO:0006355|GO:0043565
Vium1450g00007 348 SMART GATA_3 231 281 IPR000679 GO:0006355|GO:0043565
Vium1450g00007 348 MobiDBLite consensus disorder prediction 196 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1450g00007 Vium-Chr1450 76021 78077 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1450g00007 22 348 C2C2-Gata Transcription Factor Family AT4G32890 50.299 6.57e-96 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vium1450g00007 GATA 3.2e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1450g00007 - - gmx:100800146 528.094