Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1450g00006 ATGAGTGGAAGTGGCAAAAAGCGCTCTTCAAAGTGGGATTTGAGAGTTGATCCTGAATTTTCACCTGATGCTAGTAAGCAATTACGGCCTGGGTGGTCCTCTGCAGATGTTGCTGGTAGCAATAGTTCGAAGTGGTCGTATTTGGAAGGAAGTGATCAATTAAAGCCTGATATGGGATTTTCATCCAAGGAACCTTTTTCTGGAGGCCGAAGTTCACATAAGGACGATGTTATGAATAAAGACTATGGATGTTTGGATGCAACAATGGAATGGGATGAGGATGGTTACAACAAGAAAATTTCTCCTGAATCGGAGGAATGGAAACCTAAGAGACATAGTCAATCTCCTAAAAATGGTTGGAGCAGGTCAGTCAGGAGTCGAAGCAGGAGCCCTCCTCATGGTTTTAGGTGGGATTCAGGAGTCAGTGACAGAAATAGAATGCGGGCTGGTGGATCGGCACAACCATGTAGAGACTTTGCTGCTGGTAAATGCAGAAGAGGTAGCCATTGCCACTTTCTTCATGATAGTCAAAATCTTGAGGATAGTTGGGAAAATAAGAGCAGGAAAGATGGAGCTCCTAGATATTCTGTTCCCCAAGATGGTAGAGACTATTCTCTCAAGAGTGGCAGATCTAATGAAGCTTGTACTAATTTTGCAAAGGGAAGGTGTAGAATGGGAGCATCATGCAAGTTTTTGCATCATGACAATTCTGATGGACATGGTAAAGTTTCTGTGGATGAATTAAATAGAGAGAGGGATATTGATAGAAGGCACAGAGATAGTTCTTTTGAGCAGGGAGGCGGACATGGACCAAATCGAAGTAGTGATACTCTTTGCAAATTTTTTGCCAATGGAAATTGTCGAAATGGTAAATATTGTAGGTTTTCTCATGATAGGCAAGCATGTAGGAGCCCTAATAGAAGATTAAGAGATGATAGGTGGGCAAGCAATCCTGGGTTAGATCATCATAGGATGGATAGACCGAAATTGAGTGATTCAGATAGTCCTAATAGAAGGCCCAGGGATGATAGGTGGGGTTCAGATGGTAACAAGGCTGATGCAGATGAAGTTTGGGGCAGTCCGAAGTGGAATGATACAGTTGCTGTATCTGATTCAGGAAAGCTGGTTGAGGGCAAAAGTGAAAATGTTGGTGCCACAGAGCCAGGATTCACTTCGTTACCTACAAGGTATGGATGGAGTCATAGTTTGGATAAGAGCAGAGTGCATGATGAGCAGCCTTTATCAAGTGATAAGAAGGAAGTTAACAGTTGGGTATCAGGAAGTACTGCTAGCAACATTGTTTCCCAGTCAATAGGTACAGACATTTGGTTGGGTGATACGAAAATGTCTCCTGATTGGCATTACAGGGTTGGATCTTCCAACACCATTGAAGAAAAAAAGCATGAACAAAATAAGCGTGGGGTAAAACAAGGTGGTATGTATTTAGCCACCTCTGAACGTGACAGAATACAAATTGCTGCAGGACAAGGCACTAATCAGAATGCAGAGAGTTTGAATCCTTTGCATTCTTCTGGCTTGCAAACAGTTGGGCAAAGGCAGGCCCCAGTTCCGATTCTACCTTCAAAGAGAGGAATTGTTGATGGTATGCCAAACCAGGAAGTCTCCACTGAGAAAAAATACACTGCTGAACCAAATATTATGGATGCTGCCTTATCACAAGTTAGTTCAAGAAATCCTCCTCCCACTGAGAATCTAGTAGGCCAAGAACAGCTTGCTCAGCTTACCAATCTCTCAGCCTCTCTGGCCCATATCCTTGGGACAGGGCAACAGCTACCACAACTTTATGCTGCTTTAAATTCTCACTATGCCAAGGACACATCCTCCCTAGCAAAAGCTGAGGTGTCTGCTGTGCCTGTTTCCAATACATTCATCCGGTCTGATCCTGCTGTGCCTGTTTCCAATACATTCATCCACCCTGATCCTGCTGTTGGACTTCTGAAGCAGTATGACCCAATGTGTGATAGTGTTGAGCCAAAGAGTGCTGCTGCAAGTGGGTTACCCCCATCCATTCCTCCAAGTAAAAGAGTTGCAGAAGATGTTCTGGAAATTCCATCACAGTTGTCCAACACATCAAAACAAAACCATGGTGATTCTTCCAAGGCTGCTGGCCCAGAAGAACTAGTCAAGAGTGATCCTCTAGTCCAGTTGCAATCAGGTCAAAACACTGAATTTGGTAAGGATGATAACAAGGAAGTGTTACCTGACGAAAGACACAAATCTCGAGATGATCCTAAAAGTACCAAAGAGAATGGTCCTTTGGAAAACATGGAGCAAACTGGAGGTCCTGATGAGGCCAAGAAAACAAAGGATTTGAAGGGGATTCGTGCGTTTAAATTTGCACTGGTTGAGTTTGTTAAGGAGCTGCTGAAACCAACATGGAAAGAAGGTCAAATCACCAAAGATGATTATAAAACAATCGTGAAGAAAGTTGTTGATAAAGTAACCGGTTCCATGCAGGGGGCCAATATTCCTCAGACACAAGAGAAAATTGACAACTATTTGTCATTTTCAAAACCAAAGCTTAATAAACTTGTACAGGCGTATGTGGAAAAGGTTCAGAAGGCTTAG 2589 0.4307 MSGSGKKRSSKWDLRVDPEFSPDASKQLRPGWSSADVAGSNSSKWSYLEGSDQLKPDMGFSSKEPFSGGRSSHKDDVMNKDYGCLDATMEWDEDGYNKKISPESEEWKPKRHSQSPKNGWSRSVRSRSRSPPHGFRWDSGVSDRNRMRAGGSAQPCRDFAAGKCRRGSHCHFLHDSQNLEDSWENKSRKDGAPRYSVPQDGRDYSLKSGRSNEACTNFAKGRCRMGASCKFLHHDNSDGHGKVSVDELNRERDIDRRHRDSSFEQGGGHGPNRSSDTLCKFFANGNCRNGKYCRFSHDRQACRSPNRRLRDDRWASNPGLDHHRMDRPKLSDSDSPNRRPRDDRWGSDGNKADADEVWGSPKWNDTVAVSDSGKLVEGKSENVGATEPGFTSLPTRYGWSHSLDKSRVHDEQPLSSDKKEVNSWVSGSTASNIVSQSIGTDIWLGDTKMSPDWHYRVGSSNTIEEKKHEQNKRGVKQGGMYLATSERDRIQIAAGQGTNQNAESLNPLHSSGLQTVGQRQAPVPILPSKRGIVDGMPNQEVSTEKKYTAEPNIMDAALSQVSSRNPPPTENLVGQEQLAQLTNLSASLAHILGTGQQLPQLYAALNSHYAKDTSSLAKAEVSAVPVSNTFIRSDPAVPVSNTFIHPDPAVGLLKQYDPMCDSVEPKSAAASGLPPSIPPSKRVAEDVLEIPSQLSNTSKQNHGDSSKAAGPEELVKSDPLVQLQSGQNTEFGKDDNKEVLPDERHKSRDDPKSTKENGPLENMEQTGGPDEAKKTKDLKGIRAFKFALVEFVKELLKPTWKEGQITKDDYKTIVKKVVDKVTGSMQGANIPQTQEKIDNYLSFSKPKLNKLVQAYVEKVQKA 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1450g00006 862 SUPERFAMILY CCCH zinc finger 275 298 IPR036855 GO:0046872
Vium1450g00006 862 MobiDBLite consensus disorder prediction 1 79 - -
Vium1450g00006 862 MobiDBLite consensus disorder prediction 240 275 - -
Vium1450g00006 862 ProSiteProfiles Zinc finger C3H1-type profile. 273 300 IPR000571 GO:0046872
Vium1450g00006 862 ProSiteProfiles Zinc finger C3H1-type profile. 150 177 IPR000571 GO:0046872
Vium1450g00006 862 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 155 175 IPR000571 GO:0046872
Vium1450g00006 862 Pfam CCCH-type zinc finger 278 298 IPR041367 -
Vium1450g00006 862 MobiDBLite consensus disorder prediction 93 158 - -
Vium1450g00006 862 Pfam RNA-binding, Nab2-type zinc finger 214 233 - -
Vium1450g00006 862 ProSiteProfiles Zinc finger C3H1-type profile. 209 236 IPR000571 GO:0046872
Vium1450g00006 862 MobiDBLite consensus disorder prediction 93 113 - -
Vium1450g00006 862 MobiDBLite consensus disorder prediction 731 757 - -
Vium1450g00006 862 MobiDBLite consensus disorder prediction 34 49 - -
Vium1450g00006 862 MobiDBLite consensus disorder prediction 692 711 - -
Vium1450g00006 862 MobiDBLite consensus disorder prediction 240 264 - -
Vium1450g00006 862 MobiDBLite consensus disorder prediction 8 22 - -
Vium1450g00006 862 MobiDBLite consensus disorder prediction 181 196 - -
Vium1450g00006 862 MobiDBLite consensus disorder prediction 114 128 - -
Vium1450g00006 862 Gene3D - 148 248 - -
Vium1450g00006 862 Gene3D - 269 328 - -
Vium1450g00006 862 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 1 861 - -
Vium1450g00006 862 MobiDBLite consensus disorder prediction 181 208 - -
Vium1450g00006 862 MobiDBLite consensus disorder prediction 304 396 - -
Vium1450g00006 862 MobiDBLite consensus disorder prediction 723 776 - -
Vium1450g00006 862 SMART c3hfinal6 150 176 IPR000571 GO:0046872
Vium1450g00006 862 SMART c3hfinal6 210 235 IPR000571 GO:0046872
Vium1450g00006 862 SMART c3hfinal6 273 299 IPR000571 GO:0046872
Vium1450g00006 862 MobiDBLite consensus disorder prediction 304 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1450g00006 Vium-Chr1450 45202 52927 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vium1450g00006 zf-CCCH_4 2e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1450g00006 - K22909 gmx:100783856 1345.87