Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1450g00004 ATGGAATATGGCAGATTGGGGCCCGCTGACCCAGGTGGCTCCTCCCGCCGCTCCATCGCTCCTTTTACCTTACAACCCCTCCCTTCATCTTCCAAAACCAGCAAAAGAAAACTCATCATTGTCTCAATTCTCGCAGCCGCCTTAATCGTCGCCGCTGCCATCTCCGCCGTCCTCGTCACCGTGGTCCGCTCCCGCTCCTCCAGTAACCAGAACGGGTCCAACCTATCCCGCAAGCCTACTCAGGCAATATCCCGAACCTGCAGCAAGACACGTTTCCCCGCCTTATGCATCAACTCCCTCATCGACTTCCCCGGCTCCACCACTGCCTCGGAGCAAGACCTCATCCACATCTCATTCAACATGACCCTCCGCCACGTCAGCAGGGCGTTTTTCGCCTCGTCCGGCCTCTCCTTCGCTGCCACAGAACCCAAAGTTCGGGCGGCGTACGAGGATTGCCTCGAGCTATTGGAGGAGTCAATGGAAGCTCTTTCTCGATCCCTCGACTCCATCCTCTCCCCTTCCACTATATCCGACAGCGGCGGGTTGAGACCTGGCTCTGATGGATCTACCGACGATGTGATAACGTGGCTCAGCGCCGCTCTCACTAATCATGACACGTGTGCGGAGGGGTTTGAGGACTCGAGCGGGAGCGTGAAGGACCAGATGGTGAATAACTTGAAGGACTTGTCTGAACTCGTGAGCAATTGTCTCGCTATATTCTCTGCGAGTGGAAGTGGCGATTTCTCGGGGGTGCCTATTCAGAATAAGAGACGATTGATGGAAGAAGATGATGAAGCTAATGTTTCCGATGATATCTTGGCGAAATTTCCGAGATGGTTGAATAAACGTGATAGAAGATTATTGAGTTTGCCAAAGCCAGCAATTCAGGCAGATATAGTGGTGTCTAAGAACGGTGACGGAACAGTGAAGACAATAGCGGAGGCCATTAAGAAGGTGCCAGAACACGGCAGTCGCCGGTTCATCATTTACGTGAGGGCAGGAAGGTATGAGGAGAATAATTTAAAGGTGGGCAGAAAGAAAACGAATGTGATGTTTATAGGAGATGGGAAGGGCAAAACTGTCATTACAGGAAAAAAGAATGTGATAGATGGCATGACCACATTCCACACTGCATCCTTCGCTGCTAGTGGTGCTGGATTCATGGCACGAGATATCACGTTCGAGAACTATGCTGGACCGGTGAAGCACCAAGCGGTGGCGCTCCGCGTTGGAGCCGATCACGCGGTGGTGTACCGGTGCAACATCATGGGGTACCAAGACTCTCTCTACGTCCACTCTAACCGACAATTTTTTCGTGAATGTGACATTTACGGTACTGTAGACTTCATATTCGGCAATGCTGCGGTCGTCTTCCAAAAATGTAATATTTATGCCCGTAAGCCCATGGCCCAACAGAAGAACACCATTACAGCCCAGAATAGAAAAGACCCAAATCAGAATACAGGCATATCCATGCACAATTGTCGGATCCAACCTGCTTCGGATCTTGTACCGGTTAAGGGCAGCTTTCCCACCTATTTGGGCCGTCCATGGAAGCAGTTCTCTAGAACAGTGTTCATGTTATCCTACATGGGTGACCTCATAGATCCTAGTGGATGGTTGGAATGGAATGGAGACTTCGCTTTGGACACATTGTATTATGGTGAGTACATGAATTATGGTCCGGGTGCAGCTGTGGGCCAACGGGTCAAATGGCCTGGATACCGGGTCATTACTTCTTCTGTGGAGGCAAATAGGTTCACGGTGGCCCAGTTTATATCCGGGTCAGCCTGGTTACCATCCACTGGAGTGGCTTTTGCGGCCGGGTTATCCGCATGA 1839 0.5122 MEYGRLGPADPGGSSRRSIAPFTLQPLPSSSKTSKRKLIIVSILAAALIVAAAISAVLVTVVRSRSSSNQNGSNLSRKPTQAISRTCSKTRFPALCINSLIDFPGSTTASEQDLIHISFNMTLRHVSRAFFASSGLSFAATEPKVRAAYEDCLELLEESMEALSRSLDSILSPSTISDSGGLRPGSDGSTDDVITWLSAALTNHDTCAEGFEDSSGSVKDQMVNNLKDLSELVSNCLAIFSASGSGDFSGVPIQNKRRLMEEDDEANVSDDILAKFPRWLNKRDRRLLSLPKPAIQADIVVSKNGDGTVKTIAEAIKKVPEHGSRRFIIYVRAGRYEENNLKVGRKKTNVMFIGDGKGKTVITGKKNVIDGMTTFHTASFAASGAGFMARDITFENYAGPVKHQAVALRVGADHAVVYRCNIMGYQDSLYVHSNRQFFRECDIYGTVDFIFGNAAVVFQKCNIYARKPMAQQKNTITAQNRKDPNQNTGISMHNCRIQPASDLVPVKGSFPTYLGRPWKQFSRTVFMLSYMGDLIDPSGWLEWNGDFALDTLYYGEYMNYGPGAAVGQRVKWPGYRVITSSVEANRFTVAQFISGSAWLPSTGVAFAAGLSA 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1450g00004 612 Pfam Pectinesterase 298 595 IPR000070 GO:0030599|GO:0042545
Vium1450g00004 612 Gene3D - 292 610 IPR012334 -
Vium1450g00004 612 FunFam Pectinesterase 79 243 - -
Vium1450g00004 612 FunFam Pectinesterase 292 610 - -
Vium1450g00004 612 CDD PMEI-like_3 87 242 - -
Vium1450g00004 612 NCBIfam pectinesterase inhibitor domain 56 240 IPR006501 GO:0004857
Vium1450g00004 612 Gene3D Invertase/pectin methylesterase inhibitor family protein 80 243 IPR035513 -
Vium1450g00004 612 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 81 241 IPR035513 -
Vium1450g00004 612 ProSitePatterns Pectinesterase signature 2. 443 452 IPR033131 -
Vium1450g00004 612 Pfam Plant invertase/pectin methylesterase inhibitor 82 239 IPR006501 GO:0004857
Vium1450g00004 612 SUPERFAMILY Pectin lyase-like 294 609 IPR011050 -
Vium1450g00004 612 PANTHER PECTINESTERASE 53 600 - -
Vium1450g00004 612 Coils Coil 146 166 - -
Vium1450g00004 612 MobiDBLite consensus disorder prediction 1 30 - -
Vium1450g00004 612 SMART PMEI_2 78 239 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1450g00004 Vium-Chr1450 17732 22081 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1450g00004 1 611 Carbohydrate Esterase AT5G53370 62.500 0.0 793
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1450g00004 - - gmx:106796002 986.867