Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1449g00003 ATGGGGAAGAAGCGAAAGGTAGCACCCAAATCTTCTCAATCCGCTGAACCTCCGCTCAAGCATCACCAACCTGAACCCCAAATTGCGCCACCCGAGTATGAGGAAGTCGAAGAGGAAGAAGAGGAGGAAGAAGAAGTAGAGGAAGTAGAAGAGGAGGAGGAGGAGGAGGAAGAAGAAGAAGAAGAGGACGATGAAGAGCAAGAACAGCAGCAGGATGAGGATGACGACCCGATCGAAAAGCTTCTGGAACCTTTAAGCAAGGACCAGATCTTAAACCTTCTATGCGAGGCGGCGGCAAATCACCGCGACGTGGCGGACCGGATCCGCAAGGCGGCTGACGAGGATCCCGTGCACAGGAAGATCTTTGTCCACGGGTTGGGGTGGGACACCACAGCGGGAACCCTAATCAGTGCGTTCCGGCAGTACGGAGAGATCGAGGACTGCAAGGCCGTCACGGACAAGGTTTCTGGTAAGTCCAAAGGTTACGGCTTCATCCTCTTCAAGACGCGGCGCGGCGCGCGCAACGCGCTAAAGCAGCCGCAGAAGAAGATCGGCAATCGCATGACGGCGTGCCAGCTGGCGTCCATCGGCCCCGTCAGTAGCAGCCAGAGCCAGCCGCAGGCAATGCCTTCCTCAGCGCCGACGCTGTCATCGTCGGCTTCGGAGTACACGCAGAGGAAGATCTACGTGAGCAACGTCGGTGCGGAACTCGATCCGCAGAAGCTTCTGGCGTTCTTTTCACGGTTCGGGGAAATTGAGGAGGGGCCTTTGGGGCTTGATAAGCTAACAGGAAAACCGAAAGGGTTTTGTTTGTTTGTTTACAGGAGTCCGGAGAGTGCGAAGAGAGCCTTGGAAGAGCCTCATAAGGACTTTGAGGGGCATATTTTGCATTGCCAGAAGGCGATTGATGGGCCCAAGCCTGGGAAGTTGCAGCAGCAGCAACACGGGAACGTGAGTGCTCAGGTCCAGCGGACTCAGTTTCAGAGGAATGATACTGCCAATGCAGGTGGCGCGTATGTTGGTAGTGCTGCAGCAGCGCAGCCGGGACACTTGATGGCCCCCGCTGGGCCAGGGATTGGGTTTAACCAAGCGGCGTTGAATCCGGCTTTGGGGCAGGCGTTGACGGCCCTCCTGGCATCGCAAGGGACGTTGGGGCTGAATTTGTTGGGGAGTATTGGAACGAGTGCTGCGGTGAACCCTGGTGTGCCTGCTGCAGGGGCTGGAGTACAGAGTGGCTACAGTGCTCAGTCAAATATTAGTCCGGGTGTTATTGGTGGATATGGGACCCAGGTGGGGTTGCAGGCTGCATATCCGAATCCGAATCAGCAGATAGGGCAGGGTGGTTCTGGAAGAGGGCAATATGGTGGTGGTGGTGCGCCTTACATGGGGCATTAG 1395 0.5656 MGKKRKVAPKSSQSAEPPLKHHQPEPQIAPPEYEEVEEEEEEEEEVEEVEEEEEEEEEEEEEDDEEQEQQQDEDDDPIEKLLEPLSKDQILNLLCEAAANHRDVADRIRKAADEDPVHRKIFVHGLGWDTTAGTLISAFRQYGEIEDCKAVTDKVSGKSKGYGFILFKTRRGARNALKQPQKKIGNRMTACQLASIGPVSSSQSQPQAMPSSAPTLSSSASEYTQRKIYVSNVGAELDPQKLLAFFSRFGEIEEGPLGLDKLTGKPKGFCLFVYRSPESAKRALEEPHKDFEGHILHCQKAIDGPKPGKLQQQQHGNVSAQVQRTQFQRNDTANAGGAYVGSAAAAQPGHLMAPAGPGIGFNQAALNPALGQALTALLASQGTLGLNLLGSIGTSAAVNPGVPAAGAGVQSGYSAQSNISPGVIGGYGTQVGLQAAYPNPNQQIGQGGSGRGQYGGGGAPYMGH 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1449g00003 464 SUPERFAMILY RNA-binding domain, RBD 111 201 IPR035979 GO:0003676
Vium1449g00003 464 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 119 196 IPR000504 GO:0003723
Vium1449g00003 464 Gene3D - 30 197 IPR012677 -
Vium1449g00003 464 Gene3D - 198 320 IPR012677 -
Vium1449g00003 464 MobiDBLite consensus disorder prediction 31 75 - -
Vium1449g00003 464 MobiDBLite consensus disorder prediction 196 219 - -
Vium1449g00003 464 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 226 315 IPR000504 GO:0003723
Vium1449g00003 464 SMART rrm1_1 120 192 IPR000504 GO:0003723
Vium1449g00003 464 SMART rrm1_1 227 299 IPR000504 GO:0003723
Vium1449g00003 464 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 228 295 IPR000504 GO:0003723
Vium1449g00003 464 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 121 187 IPR000504 GO:0003723
Vium1449g00003 464 FunFam UBP1-associated protein 2A 112 196 - -
Vium1449g00003 464 Coils Coil 32 75 - -
Vium1449g00003 464 SUPERFAMILY RNA-binding domain, RBD 206 320 IPR035979 GO:0003676
Vium1449g00003 464 MobiDBLite consensus disorder prediction 1 75 - -
Vium1449g00003 464 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 20 312 - -
Vium1449g00003 464 MobiDBLite consensus disorder prediction 441 464 - -
Vium1449g00003 464 FunFam UBP1-associated protein 2A 212 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1449g00003 Vium-Chr1449 6330 8679 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1449g00003 213 401 C2H2 Transcription Factor Family AT2G19380 25.628 1.10e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1449g00003 K12741 - gmx:100784200 641.728