Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14496g00005 ATGGCCTTCGTAACCGTTGTATTCTCACTGCTATGCATGTTATTTGCAAAAAAAGGTGAGAGCATCATAAAGCCAGGGTCTACGCTCTGTGCTACTGAATTTGGGAATAATAGTTCATGGGTATCACCTTCTGGCCACTTTGCTTTTGGCTTTTACCCTCAAGGTAATGGCTTTGCTGTGGGTATATGGCTGCTTGGTGGTGATAGTCCACCCCAAAAAACTGTTGTGTGGACTTCTAACCGTGACAGCCGCCCACTCCCCTCAAATTCAACGTTGAACATCACCACCACCGGTCTGCGGCTTTTCCCAAGTGTGAGAGAAAGTCTTGCTCTCATTTCAACTGTTAATACAACTTCAGCATCTATGCTTGATTCTGGCAACTTTGTGCTCTATAGCAATGACAGCACTATTGTTTGGCAAAGCTTTGATCATCCAACTGACACCTTACTAGGAGGTCAGAATTTAACTGCAGGCGACCGACTGGTTTCCAGTGTGTCCGAAAAAGACTACTCGAGTGGAGCTTTCTTTATGGTCATGCAATTTGATGGAAACCTCGTTGCTTATCCAAAGAACAGCGTAGCATCTGGCTCTGATGCTTACTGGGCTTCAAACACTTTTGTGAACCCAGATCTCGGGCTTGATGCCACAGGCTCTCTTTGCATTGGGATTTCGTGTTTGAACGAAAATTTTAGCCCTGGAAACAAATCACACAACACAAGTTCAATCTACCGAGCAACACTTGTTGCAGACGGGAACTTTATACTGTATGAGCACCAATTTGAGGACAGCAGTGGCTCTACAAATGTCCGAGTACTGTGGAATACCTCGATTGGGAAATGTCAAATCAAGGGGTTTTGTGGGTTTAACAGTTATTGCTCAAACGCAACAGGCGATGCGGTGTGTGAGTGTTTGCCTGGTTTCGTCCCCTCCAACAGCAGTGGTAACGCGTCTCGGGACTGCATACTGGCCTATGCACTAGATGGTTGCCGAAGCAGTGAAGCCCGAAACCAAATGATTTTGTATAATATTACTCAGTTGGAACATGTGTCTTGGTTAGAAACTCCATATTCTGTCGTACCGATGAAGGAGAAAGAGTGCGAAAAGTCTTTGCTGGATGATTGCGATTGCGTGGCAGTGTTATATTCGAATGGCAACTGCGAAAAATACGGACTCCCGCTAACATATGGCAGATGGCTTCAGAACATATCCGTCGTTGCACTCTTCAAGAATGCTTCAGGAATCGTCCAAAATCCAATTCCAAGCAACTTCTTTCCGAAGCCTAAATCCAAGGTGGTTACGGATAACAAGAACAGGCTGATAATGGTTCTGGCCTTTACTTTGGGTTCCATTTCATTCTTATCTTTGATATTTTCCGTGTCCATTTTCTTCACTTACAAGCGGAAGGTGCATAAATATACAACGTTGTCTGCAAGTGAGAACCTGGGATTTACTGGAGAATGTTCTCTGCGTTCGTTTTCTTTCGATGAACTTGTCAAATCCACTGGAAGCTTCACGGAAGAGATAGGGAGAGGATCATTTGGAGCGGTTTACAGAGGCGAAACAGGTGACGACAGCCAAAGTATCGCTGTCAAGAGATTGGAGAGAGTTGCTGCCAGTGACTGGGAGAGGGAATTCCGGAATGAGATTACTTCTATTTCTCGAACACATCACAGGAATTTGGTTAAGCTCATTGGTTTTTGCATCGATGGAGCTAGGAGTCTCCTTGTTTACGAATACGTAAGAAACGGGTCTCTGGGAAGTCTTCTCTTCAATGATGAGAAACAAATATCCTGGAGAGACAGACTAAAAATCGCATTGGATGTTGCTAGAGGAATCCTTTACCTACACGACGAGTGTGAGGTCCGCATCATCCATTGCAATATAAATCCTCGAAATATACTAATGGATGAAGCGTGGACTGCAAAGATCTCTGATTTTGGATTTGCAAGACTACAGAAGTCTGAGCATTCAAGAATGAGAAAAGAGGATGATGGGACAAGCAAGTACTTGGCACCTGAATGGCAGAAGGAAGCACCGGTATCGGTAAAATTTGACATTTACAGTTTTGGGATGGTGCTTCTGGAGATCGTGTGCCGAAGACGCAGCATAGAAATGAATGTTTCCTCAGAAGAGGAGATAGTTCTTTCAAGCTGGGTATATAAATGTTTTGCAGAAGGGCAATTAAACAGGCTTGTTAAGGAGGATGAAAGTGTTGAGTGGAAGATAATGGAAAGAATGGTGAAGGTGGGGTTGTGGTGTGTGCAAGACACTCCTTCTGTTCGTCCCTTGATAAAGAATGTAATCTTGATGTTGGAAGGATTGAAAGATATTCCAATTCCTCCCTCTCCAGCCCACCCTCTTCATTAA 2367 0.4415 MAFVTVVFSLLCMLFAKKGESIIKPGSTLCATEFGNNSSWVSPSGHFAFGFYPQGNGFAVGIWLLGGDSPPQKTVVWTSNRDSRPLPSNSTLNITTTGLRLFPSVRESLALISTVNTTSASMLDSGNFVLYSNDSTIVWQSFDHPTDTLLGGQNLTAGDRLVSSVSEKDYSSGAFFMVMQFDGNLVAYPKNSVASGSDAYWASNTFVNPDLGLDATGSLCIGISCLNENFSPGNKSHNTSSIYRATLVADGNFILYEHQFEDSSGSTNVRVLWNTSIGKCQIKGFCGFNSYCSNATGDAVCECLPGFVPSNSSGNASRDCILAYALDGCRSSEARNQMILYNITQLEHVSWLETPYSVVPMKEKECEKSLLDDCDCVAVLYSNGNCEKYGLPLTYGRWLQNISVVALFKNASGIVQNPIPSNFFPKPKSKVVTDNKNRLIMVLAFTLGSISFLSLIFSVSIFFTYKRKVHKYTTLSASENLGFTGECSLRSFSFDELVKSTGSFTEEIGRGSFGAVYRGETGDDSQSIAVKRLERVAASDWEREFRNEITSISRTHHRNLVKLIGFCIDGARSLLVYEYVRNGSLGSLLFNDEKQISWRDRLKIALDVARGILYLHDECEVRIIHCNINPRNILMDEAWTAKISDFGFARLQKSEHSRMRKEDDGTSKYLAPEWQKEAPVSVKFDIYSFGMVLLEIVCRRRSIEMNVSSEEEIVLSSWVYKCFAEGQLNRLVKEDESVEWKIMERMVKVGLWCVQDTPSVRPLIKNVILMLEGLKDIPIPPSPAHPLH 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14496g00005 788 Gene3D - 18 144 IPR036426 -
Vium14496g00005 788 FunFam S-receptor-like serine/threonine-protein kinase 471 579 - -
Vium14496g00005 788 CDD EGF 280 312 - -
Vium14496g00005 788 ProSitePatterns Protein kinases ATP-binding region signature. 508 531 IPR017441 GO:0005524
Vium14496g00005 788 Gene3D - 145 266 IPR036426 -
Vium14496g00005 788 PIRSF SRK 1 787 IPR024171 GO:0004674
Vium14496g00005 788 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 32 782 - -
Vium14496g00005 788 Pfam S-locus glycoprotein domain 238 310 IPR000858 GO:0048544
Vium14496g00005 788 SMART blect_4 31 145 IPR001480 -
Vium14496g00005 788 Gene3D Phosphorylase Kinase; domain 1 478 579 - -
Vium14496g00005 788 ProSiteProfiles Protein kinase domain profile. 502 788 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium14496g00005 788 ProSiteProfiles Bulb-type lectin domain profile. 25 143 IPR001480 -
Vium14496g00005 788 Pfam Protein kinase domain 505 767 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium14496g00005 788 Pfam D-mannose binding lectin 74 156 IPR001480 -
Vium14496g00005 788 FunFam Putative receptor-like protein kinase 580 778 - -
Vium14496g00005 788 SUPERFAMILY Protein kinase-like (PK-like) 486 772 IPR011009 -
Vium14496g00005 788 Gene3D Transferase(Phosphotransferase) domain 1 580 779 - -
Vium14496g00005 788 SUPERFAMILY alpha-D-mannose-specific plant lectins 72 205 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14496g00005 Vium-Chr14496 18834 21368 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14496g00005 424 788 Receptor kinase-like Gene Family AT4G18250 37.135 6.94e-64 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vium14496g00005 Pkinase 1.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14496g00005 - - cam:101496142 868.226