Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14496g00003 ATGTTATTTGCAAAAAAAGGTGAGAGCATCATAAAGCCAGGGTCTACGCTCTGTGCTACTGAATTTGGGAATAATAGTTCATGGGTATCACCTTCTGGCCACTTTGCTTTTGGCTTTTACCCTCAAGGTAATGGCTTTGCTGTGGGTATATGGCTGCTTGGTGGTGATAGTCCACCCCAAAAAACTGTTGTGTGGACTTCTAACCGTGACAGCCGCCCACTCCCCTCAAATTCAACGTTGAACATCACCACCACCGGTCTGCGGCTTTTCCCAAGTGGGAGAGAAAGTCTTGCTCTCATTTCAACTGTTAATACAACTTCAGCATCTATGCTTGATTCTGGCAACTTTGTGCTCTATAGCAATGACAGCACTATTGTTTGGCAAAGCTTTGATCATCCAACTGACACCTTACTAGGAGGTCAGAATTTAACTGCAGGCGACCGACTGGTTTCCAGTGTGTCCGAAAAAGACTACTCGAGTGGAGCTTTCTTTATGGTCATGCAATTTGATGGAAACCTCGTTGCTTATCCAAAGAACAGCGCAGCATCTGGCTCTGATGCTTACTGGGCTTCAAACACTTTTGTGAACCCAGATCTCGGGCTTGATGCCACAGGCTCTCTTTGCATTGGGATTTCGTGTTTGAACGAAAATTTTAGCCCTGGAAACAAATCACACAACACAAGTTCAATCTACCGAGCAACACTTGTTGCAGACGGGAACTTTATACTGTATGAGCACCAATTTGAGGACAGCAGTGGCTCTACAAATGTCCGAGTACTGTGGAATACCTCGATTGGGAAATGTCAAATCAAGGGGTTTTGTGGGTTTAACAGTTATTGCTCAAACGCAACAGGCGATGCGGTGTGTGAGTGTTTGCCTGGTTTCGTCCCCTCCAACAGCAGTGGTAACGCGTCTCGGGACTGCATACTGGCCTATGCACTAGATGGTTGCCGAAGCAGTGAAGCCCGAAACCAAATGATTTTGTATAATATTACTCAGTTGGAACATGTGTCTTGGTTAGAAACTCCATATTCTGTCGTACCGATGAAGGAGAAAGAGTGCGAAAAGTCTTTGCTGGATGATTGCGATTGCGTGGCAGTGTTATATTCGAATGGCAACTGCGAAAAATACGGACTCCCGCTAACATATGGCAGATGGCTTCAGAACATATCCGTCGTTGCACTCTTCAAGAATGCTTCAGGAATCGTCCAAAATCCAATTCCAAGCAACTTCTTTCCGAAGCCTAAATCCAAGGTGGTTACGGATAACAAGAACAGGCTGATAATGGTTCTGGCCTTTACTTTGGGTTCCATTTCATTCTTATCTTTGATATTTTCCGTGTCCATTTTCTTCACTTACAAGCGGAAGGTGCATAAATATACAACGTTGTCTGCAAGTGAGAACCTGGGATTTACTGGAGAATGTTCTCTGCGTTCGTTTTCTTTCGATGAACTTGTCAAATCCACTGGAAGCTTCACGGAAGAGATAGGGAGAGGATCATTTGGAGCGGTTTACAGAGGCGAAACAGGTGACGACAGCCAAAGTATCGCTGTCAAGAGATTGGAGAGAGTTGCTGCCAGTGACTGGGAGAGGGAATTCCGGAATGAGATTACTTCTATTTCTCGAACACATCACAGGAATTTGGTTAAGCTCATTGGTTTTTGCATCGATGGAGCTAGGAGTCTCCTTGTTTACGAATACGTAAGAAACGGGTCTCTGGGAAGTCTTCTCTTCAATGATGAGAAACAAATATCCTGGAGAGACAGACTAAAAATCGCATTGGATGTTGCTAGAGGAATCCTTTACCTACACGACGAGTGTGAGGTCCGCATCATCCATTGCAATATAAATCCTCGAAATATACTAATGGATGAAGCGTGGACTGCAAAGATCTCTGATTTTGGATTTGCAAGACTACAGAAGTCTGAGCATTCAAGAATGAGAAAAGAGGATGATGGGACAAGCAAGTACTTGGCACCTGAATGGCAGAAGGAAGCACCGGTATCGGTAAAATTTGACATTTACAGTTTTGGGATGGTGCTTCTGGAGATCGTGTGCCGAAGACGCAGCATAGAAATGAATGTTTCCTCAGAAGAGGAGATAGTTCTTTCAAGCTGGGTATATAAATGTTTTGCAGAAGGGCAATTAAACAGGCTTGTTAAGGAGGATGAAAGTGTTGAGTGGAAGATAATGGAAAGAATGGTGAAGGTGGGGTTGTGGTGTGTGCAAGACACTCCTTCTGTTCGTCCCTTGATAAAGAATGTAATCTTGATGTTGGAAGGATTGAAAGATATTCCAATTCCTCCCTCTCCAGCCCACCCTCTTCATTAA 2331 0.4419 MLFAKKGESIIKPGSTLCATEFGNNSSWVSPSGHFAFGFYPQGNGFAVGIWLLGGDSPPQKTVVWTSNRDSRPLPSNSTLNITTTGLRLFPSGRESLALISTVNTTSASMLDSGNFVLYSNDSTIVWQSFDHPTDTLLGGQNLTAGDRLVSSVSEKDYSSGAFFMVMQFDGNLVAYPKNSAASGSDAYWASNTFVNPDLGLDATGSLCIGISCLNENFSPGNKSHNTSSIYRATLVADGNFILYEHQFEDSSGSTNVRVLWNTSIGKCQIKGFCGFNSYCSNATGDAVCECLPGFVPSNSSGNASRDCILAYALDGCRSSEARNQMILYNITQLEHVSWLETPYSVVPMKEKECEKSLLDDCDCVAVLYSNGNCEKYGLPLTYGRWLQNISVVALFKNASGIVQNPIPSNFFPKPKSKVVTDNKNRLIMVLAFTLGSISFLSLIFSVSIFFTYKRKVHKYTTLSASENLGFTGECSLRSFSFDELVKSTGSFTEEIGRGSFGAVYRGETGDDSQSIAVKRLERVAASDWEREFRNEITSISRTHHRNLVKLIGFCIDGARSLLVYEYVRNGSLGSLLFNDEKQISWRDRLKIALDVARGILYLHDECEVRIIHCNINPRNILMDEAWTAKISDFGFARLQKSEHSRMRKEDDGTSKYLAPEWQKEAPVSVKFDIYSFGMVLLEIVCRRRSIEMNVSSEEEIVLSSWVYKCFAEGQLNRLVKEDESVEWKIMERMVKVGLWCVQDTPSVRPLIKNVILMLEGLKDIPIPPSPAHPLH 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14496g00003 776 ProSitePatterns Protein kinases ATP-binding region signature. 496 519 IPR017441 GO:0005524
Vium14496g00003 776 Pfam S-locus glycoprotein domain 226 298 IPR000858 GO:0048544
Vium14496g00003 776 SMART blect_4 19 133 IPR001480 -
Vium14496g00003 776 SMART blect_4 134 267 IPR001480 -
Vium14496g00003 776 FunFam S-receptor-like serine/threonine-protein kinase 459 567 - -
Vium14496g00003 776 Gene3D Phosphorylase Kinase; domain 1 466 567 - -
Vium14496g00003 776 FunFam Putative receptor-like protein kinase 568 766 - -
Vium14496g00003 776 Gene3D - 8 132 IPR036426 -
Vium14496g00003 776 Pfam D-mannose binding lectin 62 144 IPR001480 -
Vium14496g00003 776 Pfam Protein kinase domain 493 755 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium14496g00003 776 PIRSF SRK 3 775 IPR024171 GO:0004674
Vium14496g00003 776 Gene3D Transferase(Phosphotransferase) domain 1 568 767 - -
Vium14496g00003 776 Gene3D - 133 254 IPR036426 -
Vium14496g00003 776 SUPERFAMILY alpha-D-mannose-specific plant lectins 60 193 IPR036426 -
Vium14496g00003 776 SUPERFAMILY Protein kinase-like (PK-like) 474 760 IPR011009 -
Vium14496g00003 776 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 23 770 - -
Vium14496g00003 776 CDD B_lectin 23 133 IPR001480 -
Vium14496g00003 776 ProSiteProfiles Protein kinase domain profile. 490 776 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium14496g00003 776 ProSiteProfiles Bulb-type lectin domain profile. 13 131 IPR001480 -
Vium14496g00003 776 CDD EGF 268 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14496g00003 Vium-Chr14496 12497 14914 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14496g00003 412 776 Receptor kinase-like Gene Family AT4G18250 37.135 8.24e-64 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vium14496g00003 Pkinase 1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14496g00003 - - cam:101496142 869.766