Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14496g00002 ATGGACATCATTGCCGTGATAATAACTTGCCTGTTGCTCATGTCTGTGGGGACAAGAGTTGAAACGTATCAGATACCACTCGGAGCAACACTTACTGCACAGAGTACTACTACTTCTTTCTGGCTTTCTCCTTCTGCTCAATTTGCATTTGGTTTTTATCCACTAGAACAAGGTGGTGACTTTGTCGTTGCAATTTGGCTGGTTAGCGGGGAGAACAAGACAGTGGTATGGACTGCACAACGGAACGATCCTCCGGTAACCTCAGGTGCAAAGCTACAACTAAACATGGACGGTAAACTCGTACTAACAGACAACCAACGTGAAGAGAAGGTTATTGCAGCTAATTTCAGTGCAAAAGCTGCCTCTGCCTCCGTGCTCGATTCTGGAAACTTTGTGCTCCACAACAGTAAAAACGACATCATATGGCAGAGTTTCGATTACCCAACAGATACTTTGTTAGGTGGTCAATCTCTTCCAAACGGACATCAACTGGTGTGCAATTCATCACAGAACAACCATTCCAGTGGACGGTTTCGTCTCAAGATGCAGGATGACGGAAATCTTGTTTTGTATCCAGTGGACACAAGTGACACAGGAAATGATGCTTACTGGGCCTCTGATACTAGTTTTGCTTTGAATCTCCGTGAGCAATATCAGTACCCTCTCGTCGAAAATGGTACTCTGCGGATTCTGAATGAAAGCAGTCATGGGAGGACTAAGGTGATTCTAAGTGTAATCAATAATTCATCTTTAGCTAACGATGGAAACCGGATCATCTATCGTGCAACCCTGAATTATGATGGGATATTTCATCTGTATGCGCATTTTAAGAATGGCAGTACCCAAAATTTGGCAAAATGGCCGGATGTTAAAAGCATGTGTTCAGTAAAAGGTTTTTGTGGATTCAACAGCTACTGCACATTAGATGACGCTCAACCATTATGCTCTTGTCTTTCGGGTTTTATCTCCATACATCCAAACGACTCCACTCTGGGCTGCAAAAGGAGCTTTCTGAAAGAAGATTGTTGGGGGAAGAAAGACAGCGCAACCTCGTATGAGATGAAGTCGGAGGAGAATATTGTGTGGGTGGATTTTCCTTATTTAAAGGCTGAAATGTCACAAGAAGAATGCTCCGCTGCTTGCTTGGCTGATTGCAATTGTGAGGCTGCATTTTACGACGGTGTAAGCTGCATGAAACAAAGGCTGCCTTTGAGATATCTCAGACGGCAATTAAGCGATTACAGAACCTCAGTGTTACTGTGGAAAGTGGGAGACAGCCTCAGCAATCGGACGGAAAACGATTATCCTGTGCCTGTTCCTGAACCACCACCAATCAAGGCAACAAGTAATAAAGCAACGGTGCATATTATTATCATTACATCCGTATTTTCGCTGCTTTTATGTTCAACCATTGTCATATCCAGCCACTACACGTACAAGATTCGGATTTTGAAGTATAAAAGATTGATGGAAACTGGGAACTTGGGTCTGAATGAAGAGGTGACTTTGAGAAGGTTTTCATACAGCGAACTCAAAAGAGCAACAAATAATTTCAAGATAGAACTGGGAAAAGGGTCTTTTGGAGCAGTTTACAGGGGGGCGTTGGACAAAGGTAAGAGGTTGATTGCAGTGAAGAGACTGGAGAAGTTAGTGGAAGAAGGAGAAAAGGAATTCCAAGCAGAAATGAGAGCCATTGGAAAAACCCGTCACAGGAATCTAGTTCGTTTGTTGGGGTTCTGTGCAGAGGGTTCTAAAAGGCTTCTGGTGTATGAATACATGTCCAATGGCTCCCTTGGAAACCTTATCTTCGTGGGTGAAAGTCAGAGACGTCCAGAGTGGGATGAGAGAGTAAGAATAGCGGTGGAGATTGCTAGAGGGATAATGTATCTCCATGAAGAGTGTGAGGCACCAATCATTCATTGTGACATAAAGCCTCAAAACATCTTGGTGGATGAGTTCTGGACTGCCAAAATATCCGATTTTGGGCTTGCAAAACTTCTCATGCCCGATCAAACCAGAACCATGACAGGGGCCAGAGGAACAAGAGGGTACTTGGCCCCTGAATGGAACAAGAATGTCCCAATATCTGTCAAGACTGATGTTTATAGCTACGGAATAATGCTGTTGGAAATTTTATGTTGCAGAAGAAACATCGAAGTTCGTGTCCCTGAACCTGAGGCGGTTAGTCTCTGCTCCTGGGCTTATAACTGTTTTGTTGCAGGAAAACTCAATAAGCTTTTTCCTTGGGAAGTGGTGGATGACAAAACTGCCGTGGAAAATATGGTTAAAGTGGCACTTTGGTGTATCCAAGATGAACCTTTTCTTCGCCCAACAATGAAGAGCGTCGTATTGATGTTAGAAGGGGTCACCGACATAGCAATTCCTCCTTGTCCCGCTTCCAATTCTACTTGA 2412 0.4374 MDIIAVIITCLLLMSVGTRVETYQIPLGATLTAQSTTTSFWLSPSAQFAFGFYPLEQGGDFVVAIWLVSGENKTVVWTAQRNDPPVTSGAKLQLNMDGKLVLTDNQREEKVIAANFSAKAASASVLDSGNFVLHNSKNDIIWQSFDYPTDTLLGGQSLPNGHQLVCNSSQNNHSSGRFRLKMQDDGNLVLYPVDTSDTGNDAYWASDTSFALNLREQYQYPLVENGTLRILNESSHGRTKVILSVINNSSLANDGNRIIYRATLNYDGIFHLYAHFKNGSTQNLAKWPDVKSMCSVKGFCGFNSYCTLDDAQPLCSCLSGFISIHPNDSTLGCKRSFLKEDCWGKKDSATSYEMKSEENIVWVDFPYLKAEMSQEECSAACLADCNCEAAFYDGVSCMKQRLPLRYLRRQLSDYRTSVLLWKVGDSLSNRTENDYPVPVPEPPPIKATSNKATVHIIIITSVFSLLLCSTIVISSHYTYKIRILKYKRLMETGNLGLNEEVTLRRFSYSELKRATNNFKIELGKGSFGAVYRGALDKGKRLIAVKRLEKLVEEGEKEFQAEMRAIGKTRHRNLVRLLGFCAEGSKRLLVYEYMSNGSLGNLIFVGESQRRPEWDERVRIAVEIARGIMYLHEECEAPIIHCDIKPQNILVDEFWTAKISDFGLAKLLMPDQTRTMTGARGTRGYLAPEWNKNVPISVKTDVYSYGIMLLEILCCRRNIEVRVPEPEAVSLCSWAYNCFVAGKLNKLFPWEVVDDKTAVENMVKVALWCIQDEPFLRPTMKSVVLMLEGVTDIAIPPCPASNST 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14496g00002 803 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 20 146 - -
Vium14496g00002 803 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 593 794 - -
Vium14496g00002 803 SMART serkin_6 516 786 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium14496g00002 803 SMART blect_4 28 148 IPR001480 -
Vium14496g00002 803 ProSiteProfiles Protein kinase domain profile. 516 794 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium14496g00002 803 Coils Coil 544 564 - -
Vium14496g00002 803 Gene3D Phosphorylase Kinase; domain 1 483 592 - -
Vium14496g00002 803 FunFam S-receptor-like serine/threonine-protein kinase 486 592 - -
Vium14496g00002 803 SUPERFAMILY Protein kinase-like (PK-like) 500 787 IPR011009 -
Vium14496g00002 803 Pfam S-locus glycoprotein domain 254 322 IPR000858 GO:0048544
Vium14496g00002 803 ProSitePatterns Serine/Threonine protein kinases active-site signature. 638 650 IPR008271 GO:0004672|GO:0006468
Vium14496g00002 803 FunFam Serine/threonine-protein kinase 148 284 - -
Vium14496g00002 803 ProSiteProfiles Bulb-type lectin domain profile. 149 285 IPR001480 -
Vium14496g00002 803 Pfam Protein kinase domain 521 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium14496g00002 803 ProSiteProfiles Bulb-type lectin domain profile. 16 146 IPR001480 -
Vium14496g00002 803 Gene3D - 146 244 IPR036426 -
Vium14496g00002 803 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 31 798 - -
Vium14496g00002 803 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 208 IPR036426 -
Vium14496g00002 803 Gene3D - 22 145 IPR036426 -
Vium14496g00002 803 CDD STKc_IRAK 522 788 - -
Vium14496g00002 803 Gene3D Transferase(Phosphotransferase) domain 1 593 794 - -
Vium14496g00002 803 Pfam D-mannose binding lectin 74 158 IPR001480 -
Vium14496g00002 803 ProSitePatterns Protein kinases ATP-binding region signature. 522 545 IPR017441 GO:0005524
Vium14496g00002 803 PIRSF SRK 1 803 IPR024171 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14496g00002 Vium-Chr14496 9176 12106 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14496g00002 503 798 Receptor kinase-like Gene Family AT5G38280 42.904 6.61e-65 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vium14496g00002 Pkinase 2.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14496g00002 - - gmx:100815958 1114.75