Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1448g00006 ATGGCCGAATTATTTCTCTTCAGCATAGCAGAGTCACTCATAGCAAAGCTTGCTTCTCATGCTTTTCAAGAAGCTTATCGAGTGGTGGGTTTATACCACGATCTTCGAAACCTTAGAAAGACTCTCTCTTTAGTCAAGGCTGTTCTGTTAGATGCTCAGCAAAAGCAAGATCACAACCATCAACTCCGCGAATGGCTCACTCACCTTAAAACTGTCTTCTCCGAAGCCGAAGATGTTTTGGATGAATTTGAGTGTCAAACACTGCAAAACAAAGTGGTCAAAGCTCATGGTAACACCAAAGACAAGGTAAGTCACTTCTTCTCCACTTCTAATCCACTTCTTTTTCGCTACAAGATGACACAACAAATTAAATATATCAACAAAAGACTAGACAAGGTTGCAGCGCATAGGCATAAGTTTAGTCTTCAAATAATTGATGTTGACACACGTGTTGTTTATCGGAGAGATATGACACACTCTCGTGTCAGTGATTCAGATGTGATTGGAAGGAAAAACGATAAAGAAAAGATGATAGAACTTTTGATGCAGCAGAATCCTAATGATGATGATACAAGTCTATCTGTTATCCCCATTGTGGGGATTGGAGGCTTGGGAAAGACTACACTTGCAAAGTTTGTGTTCAATGACAACAGGATCCAGGAGTGCTTCCCATTGAAGATGTGGGTGTGTGTTTCAGATGACTTTGACATTAAGCAACTTATTATCAAAATCATCAATTCTGCCAATGATGAAGATGTTCCTCCTCACCAACAGAATTTGAACATGTTGGATCTGGAGCAACTGCAAAAGCAATTGAAAAGAACACTTTCCGGTCAAAAGTTCTTACTCGTATTGGACGACGTATGGAACGAAGACCGTGTTAAATGGGTTGAGTTGAGGAATTTAATCCAAGTAAGCGGAGCAGGAAGTAAAGTTGTAGTGACCACACGTAGTCATTCCATTGCTTCTATGATGGGTACAGTTCCCTCTCACATTTTAGAAGGTCTTTCTGAGCAGGAGTCATTGTCTGTGTTTGTGAAGTGGGCATTTAAAGAAGGAGAGGAAGAAAAACATCCTCACTTAGTAAATATTGGCAGAGAAATTGTGAAAAAATGCAGAGGGGTTCCATTGGCAGTGAGAACATTAGGTAGTTTACTATTCTCGAAATTTGAGGACAATGAATGGGAATATGTGAGTAAAAATGAAATCTGGAATTTGCCTCAGAAAAAGGATGACATTTTACCTGCCCTTAAACTGAGTTATGATCTCTTGCCATCCTATTTGAGGCAATGTTTTGCATTGTTTTCCCTTTACCCAAAGGATTATTCATTCACTAGTTATGAAATAGCTGCGATTTGGGGATCACTTGGACTCATTGCACTACCAAAAACGAGTAGAACAATTGAAGATGTGGCAAATCAATATTTGCATGAACTCATGTCAAGATCCTTTCTCCAAGATTTTGAAACCTTTGGCACTAAGTTTAGGTTTAGAATACATGATTTGGTGCATGATCTTGCCCTATTTGTTGCGACGGATGAGTGTCTACATGTGAATTTCAAAATTCAAAATATTCCAGATAATGTTCGACATCTGTCTTTTGCCGAAAGCAGTTTGTTCGGAAATTTAGTCACCAAAAAATCAGCAGTTGTGAGATCCGTACTGTTTTCAAATGGTGCAGCAGCTGCCAAGGATGAAGCTTTACTAAATACGTGTCTGTCAAAGTTCAAATGCTTGCGAGTTTTGGATTTACATGGTTCGACATGCAAGACTTTGCCCCGTGCCATTGCTAAGATGAAACATTTGAGATATTTGGACATAAGCGAAAATCTCAACATTAAGAGACTCCCAGACTCTATTTGCAAGCTCCAAAGTTTGCAAGTGTTGTCAATTAAGAGATGCAAGAAGCTGGAAATATTGCCCAAAGGATTAAGAAAACTAATCAGTCTCCGTTCTTTGGACTTTAGCACAAAGCAAACTATTTTGCCTTTGAACGAGATCGCACAATTGGGATCGCTTGAATACTTGGTCATTGATTCATGCCATAATGTGGAGTCCGTCTTTGGAGGGGTGAAATTCCATGCTCTTAAAACATTGGTAGTTCGGAACTGTCAGAGTCTAAAGTCATTGTGGCTGGATGGTCAAAATTTTCCTGAATTAGAAACATTGATTGTTGCAGACTGCGGTGATTTGGACTTGGACTTGTGGAAGGGCGATCATGAAAAAGAAAGACCCAAACTGAAGTTAAAATTTATTGGATTTAACAGTTTATCACAGCTGGTGGCCCTGCCTAAATGGCTTCAGGAAGCTGCCAAATCCTTACAGTGCTTGTTTGTTTCAAATTGTCACAATATTGAAACCCTTCCAGATTGGTTAACAACTATGACTGATCTCAAAGCACTTGGTTTAATAAATTGTCCAAATTTGGTATCTATGTCAGATAACATTCATTACCTCACTGCACTTGAAAGTTTGAAAATTAGAGGTTGTGCTAACTTATATAAAAAGTATGAACCCAATGTCGGAGAGTTTTGGCCCAAAATATCACACATCAAGAACATTGTGATTGATGAAAAAGAAGAACCTATGAAGAAGAGCCAGACATAG 2607 0.3897 MAELFLFSIAESLIAKLASHAFQEAYRVVGLYHDLRNLRKTLSLVKAVLLDAQQKQDHNHQLREWLTHLKTVFSEAEDVLDEFECQTLQNKVVKAHGNTKDKVSHFFSTSNPLLFRYKMTQQIKYINKRLDKVAAHRHKFSLQIIDVDTRVVYRRDMTHSRVSDSDVIGRKNDKEKMIELLMQQNPNDDDTSLSVIPIVGIGGLGKTTLAKFVFNDNRIQECFPLKMWVCVSDDFDIKQLIIKIINSANDEDVPPHQQNLNMLDLEQLQKQLKRTLSGQKFLLVLDDVWNEDRVKWVELRNLIQVSGAGSKVVVTTRSHSIASMMGTVPSHILEGLSEQESLSVFVKWAFKEGEEEKHPHLVNIGREIVKKCRGVPLAVRTLGSLLFSKFEDNEWEYVSKNEIWNLPQKKDDILPALKLSYDLLPSYLRQCFALFSLYPKDYSFTSYEIAAIWGSLGLIALPKTSRTIEDVANQYLHELMSRSFLQDFETFGTKFRFRIHDLVHDLALFVATDECLHVNFKIQNIPDNVRHLSFAESSLFGNLVTKKSAVVRSVLFSNGAAAAKDEALLNTCLSKFKCLRVLDLHGSTCKTLPRAIAKMKHLRYLDISENLNIKRLPDSICKLQSLQVLSIKRCKKLEILPKGLRKLISLRSLDFSTKQTILPLNEIAQLGSLEYLVIDSCHNVESVFGGVKFHALKTLVVRNCQSLKSLWLDGQNFPELETLIVADCGDLDLDLWKGDHEKERPKLKLKFIGFNSLSQLVALPKWLQEAAKSLQCLFVSNCHNIETLPDWLTTMTDLKALGLINCPNLVSMSDNIHYLTALESLKIRGCANLYKKYEPNVGEFWPKISHIKNIVIDEKEEPMKKSQT 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1448g00006 868 Gene3D - 10 124 - -
Vium1448g00006 868 PRINTS Disease resistance protein signature 275 289 - -
Vium1448g00006 868 PRINTS Disease resistance protein signature 195 210 - -
Vium1448g00006 868 PRINTS Disease resistance protein signature 621 637 - -
Vium1448g00006 868 PRINTS Disease resistance protein signature 372 386 - -
Vium1448g00006 868 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 434 IPR027417 -
Vium1448g00006 868 Pfam Rx N-terminal domain 11 98 IPR041118 -
Vium1448g00006 868 Gene3D - 335 419 IPR042197 -
Vium1448g00006 868 SUPERFAMILY L domain-like 498 834 - -
Vium1448g00006 868 FunFam Probable disease resistance protein At1g61300 150 329 - -
Vium1448g00006 868 Pfam Leucine rich repeat 579 634 IPR001611 GO:0005515
Vium1448g00006 868 Gene3D - 151 330 IPR027417 -
Vium1448g00006 868 PANTHER DISEASE RESISTANCE PROTEIN RP 35 827 IPR044974 GO:0006952
Vium1448g00006 868 Pfam NB-ARC domain 173 422 IPR002182 GO:0043531
Vium1448g00006 868 Gene3D Ribonuclease Inhibitor 568 737 IPR032675 -
Vium1448g00006 868 Gene3D Ribonuclease Inhibitor 745 852 IPR032675 -
Vium1448g00006 868 Gene3D - 420 508 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1448g00006 Vium-Chr1448 57591 60404 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1448g00006 178 863 WRKY Transcription Factor Family AT5G45050 21.781 2.13e-11 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1448g00006 - - pvu:PHAVU_001G133600g 1236.86