Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14479g00013 ATGAACATGTCAGATGGAGAGAAGAAAGAAAAGGGGACACGGCAGGAACGAAAGGTTCCTCTTCTGAAGCTCTTCTCCTTCGCTGACTTGTACGACTGCGTTTTGATGGGTGTCGGATCTGTTGGAGCGTGTGTTCATGGTGCCTCTGTGCCTGTTTTCTTTGTCTTCTTCGGAAAGATTATCAATGTAATAGGTTTGGCTTACCTTTTCCCCAAAGAAGCTTCCCACGAAGTTGCCAAGTATGCGTTGGATTTTGTGTATCTAAGCATAGTAATACTGTTTTCATCTTGGACAGAGGTGGCATGTTGGATGCATACTGGAGAACGTCAAGCTGCAAAGATGAGGATGGCATACTTAAGGTCAATGTTGAATCAAGATATAAGTCTTTTTGATACCGAGGCTTCAACTGGAGAGGTTATTTCTTCTATTACCACTGACATCATCGTTGTTCAAGATGCACTTTCTGAGAAGGTTGGGAACTTCATGCACTACATAAGCCGTTTTATCGCAGGCTTTACCATTGGTTTTATGAGAGTGTGGCAAATAAGTTTAGTTACACTTGCCATTGTGCCCTTAATTGCTATTGCTGGTGGCCTTTACGCTTACGTCACCATTGGCCTTATCGGAAAAGTTCGAAAAGCATATGTGCGAGCTGGTGAAATTGCTGAGGAGGTGATAGGCAATGTGAGAACGGTACAAGCATTTGCAGGGGAAGAAAGAGCAGTGAGGTCATACAAAGCAGCTCTGATGAACACATATAGACATGGTCGAAAAGCAGGTTTAGCTAAGGGTCTGGGATTAGGCTCCATGCATTGTGTTCTTTTCCTTTCATGGGCTCTCCTTGTTTGGTTCAATAGCATAGTTGTTCACAAGAATATCGCCAATGGTGGCGATGCTTTCACTACAATGCTCAATGTAGTCATTTCTGGCCTGTCACTTGGTCAGGCAGCACCAGATATTTCTGCATTTATCAGGGCAAAGGCATCAGCTTATCCCATTTTTGAGATGATAGAGAGGGACACCATGAGCAAAGTCAGCTCAGAAAATGGTCAAAAGTTAAGCAAATTGGAAGGTCACGTCCAATTTAAAGATGTCTGTTTTAGTTATCCATCTCGTCCTGATGTGGTTATCTTCAACAACTTTTGTCTTGAGATTCCTCCAGGGAAAATTTTAGCTCTTGTGGGAGGAAGTGGTTCCGGAAAAAGCACAGTTATATCATTGATTGAGCGCTTCTATGAACCACTTTCTGGTGAAATACTATTAGATGGGAACACCATCAGGGAACTTGATCTCAAATGGCTTAGGCAACAGATTGGGCTGGTTAATCAAGAGCCTGCACTTTTTGCTACAAGCATCAGGGAAAACATACAGTACGGAAAAGATGATGCCACTCTTGAAGAAGTAAATCACGCTGTGATGCTCTCTGATGCTCAGTCTTTCATTAACAATCTTCCTGATGGATTAGATACTCAGGTTGGTGAGAGAGGGATACAACTATCCGGGGGACAGAAACAACGGATTGCAATATCTCGTGCCATAGTTAAGAATCCATCAATCCTTTTATTAGATGAAGCAACCAGTGCTCTGGATGCAGAGTCTGAGAAAAGTGTACAAGAGGCACTTGATCGTGTCATGGTTGGTAGAACAACCGTGATAGTTGCACACAGACTTTCTACCATTAGGAATGCAGATATGATTGTTGTTATTGAGGGAGGGAAGGTGGTGGAAATAGGCAATCACGAAGAACTCATTTCCAACCCAAATAATGTATATGCATCTCTTGTTCAAATCCAAGAAACAGCCTTTTCTCAAGGCCACCTTTCTGTGGATCCTTACTTGGGAGGCTCATCAAGGCGCCTAGGAGAGTCGTCATCCCGCACAACAAGCTTTCGTGGTAGTTTTCGCTCAGACAAAGAATCTACTAGCCGGGCTTTTGGTGATGGAGTAGAAAGTGTTGGAAGTTCAAGGCATGTATCAGTAAAAAGACTATATTCCATGATTGGTCCTGATTGGCCTTATGGTGTTTGTGGAACCTTGGGTGCATTTATTGCTGGAGCACAAATGCCACTCTTTGCTCTTGGAATCTCTCATGCTCTTGTATCTTATTACATGGATTGGGACACAACACGTCATGAAGTGAAAAAAATTGCATTTCTCTTCTGTGGGGCAGCAGTTTTGACCATCACTGCCCATGCCATTGAACATCTTTCCTTTGGAATCATGGGAGAACGACTTACCCTTCGTGCAAGAGAAAAAATGTTTTCCGCTATTTTAAAGAGTGAAATTAGTTGGTTTGATGACATAAACAACACAAGTTCTATGCTTTCATCACGTTTAGAGACCGATGCAACATTTTTAAGAACTATAATTGTTGATCGTTCGACAATTCTTCTGCAAAATGTTGGTCTGGTTGTTGCTTCATTTATTATTGCCTTCATGTTGAACTGGAGGATCACGCTTGTTGTACTAGCCACGTACCCTTTGATCATTAGTGGTCACATTAGCGAGAAACTATTCATGCAAGGCTTTGGTGGCAACTTGAGCAAAGCATATCTAAAAGCCAACATGTTGGCTGGGGAGGCTGTGAGTAATATCCGCACTGTGGCTGCATTTTGTGCTGAAAAAAAGGTCCTTGACCTTTATGCTAATGAGCTTGTGGAGCCTTCAAAGCGTTCATTCAATAGAGGTCAAATTGCTGGCATATTCTATGGCATTTCCCAGTTCTTTATTTTCTCATCTTATGGCCTTGCATTGTGGTATGGATCTGTGTTGATGGAGAAAGAGCTTTCTAGCTTCAAATCAATTATGAAGTCGTTCATGGTTTTGATTGTAACAGCACTAGCTATGGGGGAGACTTTAGCACTGGCACCTGATCTTTTGAAAGGAAATCAAATGGTTGCATCCATCTTCGAAGTGATGGATAGAAAGACAGGAATATTAGGTGATGTTGGAGAAGAGTTGAAGACAGTGGAAGGAACAATTGAGTTAAAAAGAATCCGTTTCAACTATCCTTCAAGGCCAGACGTGGTTATTTTCAATGATTTCAATCTCACAGTGCCTGCAGGAAAGAATATTGCCCTTGTGGGGCATAGTGGATGTGGTAAAAGTTCAGTAATCTCCCTTATACTCAGATTTTACGATCCAACATCTGGGAAGGTGATGATTGATGGAAAAGACATCAAGAAACTCAAGTTGAAATCCCTTAGGAAACATATTGGTCTAGTGCAACAAGAACCTGCTCTTTTTGCAACATCAATATATGAAAACATTCTTTATGGAAAGGAAGGAGCTTCAGAAGGTGAAGTGATTGAAGCAGCTAAACTTGCCAATGCTCATAGCTTTATCAGTGCTCTTCCTGAGGGCTACTCCACCAAAGTAGGTGAGAGAGGAGTTCAACTGTCTGGTGGCCAGAAGCAAAGGGTAGCTATTGCAAGGGCTGTTTTGAAAAACCCTGAAATTTTGCTGCTAGATGAAGCCACCAGTGCACTGGATTTGGAGTCAGAGCGTGTGGTGCAACAAGCTCTGGACAAATTGATGCAGAACAGAACAACAGTTATAGTGGCACATAGGCTATCCACAATAAAAAATGCAGACCAAATAGCAGTTTTAGAGGATGGAAAGATAATTCAGCGAGGGATTCATGCAAGACTTGTAGAAATCACGGATGGAGCATACTACAAATTAGTCAGCCTTCAGCAACATGAACAGCATGTACAAGAACATTTTGATTGA 3732 0.4207 MNMSDGEKKEKGTRQERKVPLLKLFSFADLYDCVLMGVGSVGACVHGASVPVFFVFFGKIINVIGLAYLFPKEASHEVAKYALDFVYLSIVILFSSWTEVACWMHTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISSITTDIIVVQDALSEKVGNFMHYISRFIAGFTIGFMRVWQISLVTLAIVPLIAIAGGLYAYVTIGLIGKVRKAYVRAGEIAEEVIGNVRTVQAFAGEERAVRSYKAALMNTYRHGRKAGLAKGLGLGSMHCVLFLSWALLVWFNSIVVHKNIANGGDAFTTMLNVVISGLSLGQAAPDISAFIRAKASAYPIFEMIERDTMSKVSSENGQKLSKLEGHVQFKDVCFSYPSRPDVVIFNNFCLEIPPGKILALVGGSGSGKSTVISLIERFYEPLSGEILLDGNTIRELDLKWLRQQIGLVNQEPALFATSIRENIQYGKDDATLEEVNHAVMLSDAQSFINNLPDGLDTQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRVMVGRTTVIVAHRLSTIRNADMIVVIEGGKVVEIGNHEELISNPNNVYASLVQIQETAFSQGHLSVDPYLGGSSRRLGESSSRTTSFRGSFRSDKESTSRAFGDGVESVGSSRHVSVKRLYSMIGPDWPYGVCGTLGAFIAGAQMPLFALGISHALVSYYMDWDTTRHEVKKIAFLFCGAAVLTITAHAIEHLSFGIMGERLTLRAREKMFSAILKSEISWFDDINNTSSMLSSRLETDATFLRTIIVDRSTILLQNVGLVVASFIIAFMLNWRITLVVLATYPLIISGHISEKLFMQGFGGNLSKAYLKANMLAGEAVSNIRTVAAFCAEKKVLDLYANELVEPSKRSFNRGQIAGIFYGISQFFIFSSYGLALWYGSVLMEKELSSFKSIMKSFMVLIVTALAMGETLALAPDLLKGNQMVASIFEVMDRKTGILGDVGEELKTVEGTIELKRIRFNYPSRPDVVIFNDFNLTVPAGKNIALVGHSGCGKSSVISLILRFYDPTSGKVMIDGKDIKKLKLKSLRKHIGLVQQEPALFATSIYENILYGKEGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDLESERVVQQALDKLMQNRTTVIVAHRLSTIKNADQIAVLEDGKIIQRGIHARLVEITDGAYYKLVSLQQHEQHVQEHFD 1243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14479g00013 1243 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 994 1230 IPR003439 GO:0005524
Vium14479g00013 1243 FunFam ABC transporter B family member 4 984 1239 - -
Vium14479g00013 1243 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 360 596 IPR003439 GO:0005524
Vium14479g00013 1243 MobiDBLite consensus disorder prediction 617 649 - -
Vium14479g00013 1243 FunFam ABC transporter B family member 1 23 360 - -
Vium14479g00013 1243 PANTHER ABC TRANSPORTER B FAMILY 6 602 IPR039421 -
Vium14479g00013 1243 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 350 598 IPR027417 -
Vium14479g00013 1243 CDD ABC_6TM_Pgp_ABCB1_D2_like 664 979 - -
Vium14479g00013 1243 CDD ABC_MTABC3_MDL1_MDL2 994 1232 - -
Vium14479g00013 1243 SUPERFAMILY ABC transporter transmembrane region 661 975 IPR036640 GO:0005524|GO:0016020
Vium14479g00013 1243 SMART AAA_5 387 581 IPR003593 GO:0016887
Vium14479g00013 1243 SMART AAA_5 1021 1219 IPR003593 GO:0016887
Vium14479g00013 1243 ProSitePatterns ABC transporters family signature. 499 513 IPR017871 GO:0005524|GO:0016887
Vium14479g00013 1243 Gene3D - 350 599 IPR027417 -
Vium14479g00013 1243 Gene3D - 984 1243 IPR027417 -
Vium14479g00013 1243 Pfam ABC transporter 379 527 IPR003439 GO:0005524
Vium14479g00013 1243 CDD ABC_6TM_Pgp_ABCB1_D1_like 36 333 - -
Vium14479g00013 1243 ProSitePatterns ABC transporters family signature. 1133 1147 IPR017871 GO:0005524|GO:0016887
Vium14479g00013 1243 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 38 325 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium14479g00013 1243 SUPERFAMILY ABC transporter transmembrane region 24 330 IPR036640 GO:0005524|GO:0016020
Vium14479g00013 1243 FunFam ABC transporter B family member 2 795 991 - -
Vium14479g00013 1243 FunFam ABC transporter B family member 19 350 599 - -
Vium14479g00013 1243 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 988 1232 IPR027417 -
Vium14479g00013 1243 CDD ABC_MTABC3_MDL1_MDL2 360 598 - -
Vium14479g00013 1243 Gene3D ABC transporter type 1, transmembrane domain 23 963 IPR036640 GO:0005524|GO:0016020
Vium14479g00013 1243 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 677 961 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium14479g00013 1243 Pfam ABC transporter transmembrane region 676 947 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium14479g00013 1243 Pfam ABC transporter transmembrane region 41 309 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium14479g00013 1243 Pfam ABC transporter 1013 1161 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14479g00013 Vium-Chr14479 93414 105989 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14479g00013 38 625 Calmodulin-binding Proteins AT2G36910 38.255 5.74e-113 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14479g00013 K05658 - gmx:100809752 2195.62