Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14479g00009 ATGGATTACGCTCGAGACGGGAACGTGGTTCAAATAATCACGGGCGGTGGCGGAGGAGGAGAGAGCTGGTCCAGCGATCAAGCCGATTGGGCAACGGAGGATGAGTACCGGTATTGGAACAACAACAACAACAACGGAGACGCGGAATCGACGCCGTCGAACTCGAATTACGAGTCACGGTCGGAGCCGCCTAGCAAAAAGTCCCGGAATTCGCAGGATGGCAGCTCAAACCGCTCAAAGGCTATAGGGAAAATGTTCTTCAAGACGAAACTGTGCTGCAAGTTCAGGGCAGGGACCTGCCCTTACATCACCAACTGCAATTTTGCCCATAGCATTGAGGAGCTACGCCGCCCGCCACCAAATTGGCAGGAGATTGTTGCAGCACACGAGGAGGAGAAGGCAGTGATGGCAGAGCCAAGGGAGGAGTTTCAGATTCCCACTGTGGGGTCTTCCACCTTTGCAGGTGATACGATGCAGAGGTCCTACAAGGGAAGGCATTGTAAGAAGTTTTACACTGAGGAAGGGTGTCCCTATGGGGATAGTTGCACCTTCCTTCATGATGAACAATCAAAGAACCGAGAGAGTGTTGCTATAAGTTTAGGCCCGGGGGGTTATGCTGGCGGTGGTGGTGGTGGAAGCGGTGGCAGTGGTAGTGGTGGGGGCGGTGGAAGTGGAAATGGTGGTGGTGGTGGTGGTAGTGGTGGTGCTAATGCTGCTGGGAATGGGGCTAATTCGAAGCCCTCTAATTGGAAAACCAGGATTTGCAATAAATGGGAGATGACAGGGTATTGCCCCTTTGGCAACAAATGCCATTTTGCTCATGGTGCCACAGAGTTGCACAGATATGGAGGGGGGCTTATGGAAGGAGAAAGCAGAGATGGTGTTTCAGTGGTTGGCTGTGACACGAATAAGGGAGCAGCTTCAAAAGCTTCAGCTGATAACGTTGTTGCTGCGGTTACTCCTGTTGCCCATTCTGATGTATACCATATTGGAGTCCCTTCACAAAGGCCTTCCATTGTGATTCAGAGACCAGGGCAGAGAACTCATCAGAAGTGGAAAGGTCCAGATAAAATCAGTAGGATATATGGTGATTGGATTGATGACATTGAATAG 1113 0.5112 MDYARDGNVVQIITGGGGGGESWSSDQADWATEDEYRYWNNNNNNGDAESTPSNSNYESRSEPPSKKSRNSQDGSSNRSKAIGKMFFKTKLCCKFRAGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEEKAVMAEPREEFQIPTVGSSTFAGDTMQRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNRESVAISLGPGGYAGGGGGGSGGSGSGGGGGSGNGGGGGGSGGANAAGNGANSKPSNWKTRICNKWEMTGYCPFGNKCHFAHGATELHRYGGGLMEGESRDGVSVVGCDTNKGAASKASADNVVAAVTPVAHSDVYHIGVPSQRPSIVIQRPGQRTHQKWKGPDKISRIYGDWIDDIE 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14479g00009 370 MobiDBLite consensus disorder prediction 209 232 - -
Vium14479g00009 370 Gene3D - 243 281 - -
Vium14479g00009 370 Gene3D - 81 117 - -
Vium14479g00009 370 MobiDBLite consensus disorder prediction 1 79 - -
Vium14479g00009 370 SUPERFAMILY CCCH zinc finger 247 280 IPR036855 GO:0046872
Vium14479g00009 370 ProSiteProfiles Zinc finger C3H1-type profile. 249 277 IPR000571 GO:0046872
Vium14479g00009 370 MobiDBLite consensus disorder prediction 36 61 - -
Vium14479g00009 370 FunFam Zinc finger CCCH domain-containing protein 82 118 - -
Vium14479g00009 370 Gene3D - 154 201 - -
Vium14479g00009 370 PANTHER CCCH ZINC FINGER/TIS11-RELATED 224 281 IPR045877 GO:0003729
Vium14479g00009 370 FunFam Zinc finger, CCCH-type 155 193 - -
Vium14479g00009 370 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 250 275 IPR000571 GO:0046872
Vium14479g00009 370 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 87 111 IPR000571 GO:0046872
Vium14479g00009 370 ProSiteProfiles Zinc finger C3H1-type profile. 161 189 IPR000571 GO:0046872
Vium14479g00009 370 SMART c3hfinal6 249 276 IPR000571 GO:0046872
Vium14479g00009 370 SMART c3hfinal6 161 188 IPR000571 GO:0046872
Vium14479g00009 370 SMART c3hfinal6 86 112 IPR000571 GO:0046872
Vium14479g00009 370 SUPERFAMILY CCCH zinc finger 84 117 IPR036855 GO:0046872
Vium14479g00009 370 SUPERFAMILY CCCH zinc finger 160 189 IPR036855 GO:0046872
Vium14479g00009 370 ProSiteProfiles Zinc finger C3H1-type profile. 86 113 IPR000571 GO:0046872
Vium14479g00009 370 FunFam zinc finger CCCH domain-containing protein 15-like 243 282 - -
Vium14479g00009 370 Pfam CCCH-type zinc finger 165 187 IPR041367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14479g00009 Vium-Chr14479 41761 45905 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14479g00009 251 279 C3H Transcription Factor Family AT1G68200 62.069 3.65e-07 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vium14479g00009 zf-CCCH 1.2e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14479g00009 - - gmx:100788208 588.571