Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14479g00007 ATGTCTTCGCTGCAGTACGACCCGGCACCGGTCGCGCCGCCGTACAACACCCCACCAGCGCTGATCGCCTTCACGCTGGGTGTGCTGGTGGTGTGCTTCGTGGCGTTCAGCATCGTTTACCTGTGCAAATACTGTTTCTCGAGCGTGGTCCAAACCTGGGCCTTTCAACGCACCGCTTCGGGTTCCATCATTCGTCTGACGCCCCATAGATCTCCTCCCAGAGGCCTTGACCCTTCGTTGCTTGAGGTCTTCCCCACCTTCCCCTACTCCTCCGTGAAGGACCTCCGGAAGGATCAGAAGTACTGCTTGGAATGCGCCATCTGTTTGGTGGAGTTTGAGGATGACAGCAAGCTCCGCCTCTTGACCCTCTGCTGCCATGTCTTCCACCAGGACTGCATCGACCTCTGGCTCTGCTCTCACAAAACCTGCCCCGTTTGTCGCCGAGACCTTGACTCTCCCCCAGACGACCAACCTCTCAAACCCGGCGACGTCGTTGTTTCCTCAGCCAGCGGCGAGATACGCGTTGATGTGAGAGAAGAAGAAGGCCTTGATTGTGGGCGTGAACATGTTTGTGATAACAGCCAAGATCAACAACAACAACAGGAACAAACTGAACCTGAACCTGAACGTGGTCGTGGTCTTGGACAGGAACATGAGGTGGTTGATGCACACGAGGAACAGATGTTTGTACGGTCGCATTCCACCGGGCACTCCATAGTTATGATCAGAGGGGAAGGGGATGATGAGGGAAAGAATGACGATGACAAGTACACGTTGAAATTGCCGGAGCATGTTTTGAGAGTGAACAGTAAACATAATTCTACGAGGAGCTGTGCGAGTTTTAAGGATATGACCAAGCTTGATGCTCCTCTACCTTGCAGTAATTGTGGGTTTGTTCAACCCCCATCACCCAGTTGCTCCTCCTCCCCAACTCATACTCAGAGACCTTAA 951 0.5342 MSSLQYDPAPVAPPYNTPPALIAFTLGVLVVCFVAFSIVYLCKYCFSSVVQTWAFQRTASGSIIRLTPHRSPPRGLDPSLLEVFPTFPYSSVKDLRKDQKYCLECAICLVEFEDDSKLRLLTLCCHVFHQDCIDLWLCSHKTCPVCRRDLDSPPDDQPLKPGDVVVSSASGEIRVDVREEEGLDCGREHVCDNSQDQQQQQEQTEPEPERGRGLGQEHEVVDAHEEQMFVRSHSTGHSIVMIRGEGDDEGKNDDDKYTLKLPEHVLRVNSKHNSTRSCASFKDMTKLDAPLPCSNCGFVQPPSPSCSSSPTHTQRP 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14479g00007 316 MobiDBLite consensus disorder prediction 297 316 - -
Vium14479g00007 316 SUPERFAMILY RING/U-box 104 159 - -
Vium14479g00007 316 MobiDBLite consensus disorder prediction 298 316 - -
Vium14479g00007 316 SMART ring_2 105 146 IPR001841 -
Vium14479g00007 316 Pfam Ring finger domain 104 147 IPR001841 -
Vium14479g00007 316 MobiDBLite consensus disorder prediction 203 217 - -
Vium14479g00007 316 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
Vium14479g00007 316 MobiDBLite consensus disorder prediction 188 217 - -
Vium14479g00007 316 PANTHER RING FINGER DOMAIN-CONTAINING 17 157 - -
Vium14479g00007 316 FunFam E3 ubiquitin-protein ligase ATL6 65 153 - -
Vium14479g00007 316 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 153 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14479g00007 Vium-Chr14479 38676 39933 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14479g00007 2 289 C3H Transcription Factor Family AT2G35420 30.345 1.75e-34 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14479g00007 - - vum:124822565 627.861