Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14471g00001 ATGAGAAGTGAAGAGGTTGTGTTGTCCTTCTCCTTTCTTCTTCTTTGCCTGCCAATATGTTTGGGTGGAGATACTCTAAAGGCAAACCAGAGCATAACTCATCACCACTCCAATGGAAACCTTGTTTCATCAAACGCCACATTTGAGCTGGGCTTCTTTTCTCCTGCTGAAAAAAGTGGAGGGAAATACCTGGGGATTTGGTATCACGGCTTGGAACCACAAACAGTGGTGTGGGTTGCCAACAGAGATCATCCTGTTCCCGATTCCACTGGAGTTTTTCGAATTGCGGAGGATGGAAATCTGGTGGTAGAATATGCATTCAGAAGCCTCTGGTCTTCTGGACTTGGAGCATCCTCGTCCTCTAACAGAACACTGCAGCTCCTAGATTCTGGGAATCTAGTACTAAAAGAGGATGACTCTGAAGCGACATACCTGTGGGAAAGCTTCAAGAACCCAACAGACACGTTTCTTCCCGGCATGAAAATGGACGCGACTATGTCGTTGACTTGTTGGAAAGACTCCGCTAACCCAGCACCTGGGAACTTCACCTTCAAGCTGACTCAACAGGCTGAGAAACGGAGCTTCGTTGTGCAATATCATTCAAAAATCCACTGGGCACCTGATGAATTTGACACAGAAGCGGCTTCCCAGGTGGTATTTAATTTGTTGAACAACGACATCTGGAGTACTAAAACGTACAATTATTCTAACAAAACAGTCTTCGTATCACAACCTTACATGTACTATAAATCAAGGCTTTTGATGAATTCTAGAGGGGAGATAGTGTTTTTGGAGTGGGATGAGGCAGAATCAAATTGGACTAAGATATGGTCTGGGCCAGAGAACAAGTGTGACATACCTGATTATTGCGGGAGCTTCGGCCTATGTAACAAAGATAACTTCATTCAGTGCAGATGTTTGCCAGGATTCAGTTCTATTCAAGGTTTTCCTTCTGATCGAGAATCGGAGTCCCAAGGATGTGCGAGAAAATCAACGACGTGTACCAGTACCAACGAGGGCGTGATGTTCCTGAACTTAACCAACATAAAAGTGGCCGACCCAGACGAAGAGATTAATACTGAAACAGAAGGAAAATGCCAATCCATGTGCATCAACATGTGTCCCCAATCACAGTGTCAGGCCTATTCATTTAATAGTACGACATATGGTGATCGTGGTTCATACTCGTGCAATATCTGGAAGCGGCCTTTATCTTCTCTTGTCGAGAACTACCTGCGCGGTCATGATCTTTCTATCATGGTTAAGAAATCAGACATAGCACCAACTGCTAAATCGTGTGAACCTTGCGGCACATATGCTATTCCTTATCCCCTAAGCAATGGGTCAAACTGCGGAGACCCCATGTACAACTACTTCAATTGCAACAAATCCTCCGGCAAAGTTAGTTTCACGATGCCCGGAGGAAAATCATACCAAGTTACTTGGATCGATGAAGATTCCAGAATGTTTTCCATTCAAACAAACTATTTCAATTCATTCAATTACAGTTTCAGCAGTCAAAATAGCACTGATTTTCCGTTTAAGGTTCAGTACAATGAAGATGCCGTAATAAAAATCAATTGGTTACCAGCACCAGAACCCCCCTGTAGTCAGCTTACAGACTGCATGAATTGGCCACATTCAACATGCAGAGCAACAAGGGAAGGTGGAAGTAGGTGCCATTGTGATTCAAACTATAATTGGAATAACACATTAATGAGCTGCACCCAAGAAGAGCAATCAGGAAATCACTCAACTCGACTAGAACTGATTCTTTTAGCAACTCTTGGTTCCCTGGCTGCTGTGACATGCATAATAGCATTCGGCATCGTGTGGAGAAAGAAAAAATCCCTTAAACATGATCGAGCAAGCTCTCAAATTCAGGAGAGCTTGTATGAGAGTGAAAGACATGTGAAAGGTTTGATTGGCTTAGGAAGTTTAGAAGAAAAAGACATCGAAGGCATTGAAGTTCCCTTTTACACTTTTGCAAGCATTCTCGCAGCTACAGATAGTTTCTCGGATTCTAACAAGCTTGGAAGAGGAGGTTATGGACCTGTTTATAAGGGAACGTTTCCAGGAGGTCAAGAAATAGCTGTAAAGAGACTTTCAAGTGTTTCCACTCAAGGCCTGCAAGAATTCAAAAATGAGGTTATTTTGATTGCCAAACTTCAACATCGGAACCTTGTTAGACTGAGGGGCTACTGCATAAAAGGGGATGAAAAAATCTTACTTTATGAATACATGCCAAATAAGAGCTTGGACTCATTTATATTTGGTGAGACTCCATATTCCTTCACACAACCTATTCTCTAA 2313 0.4272 MRSEEVVLSFSFLLLCLPICLGGDTLKANQSITHHHSNGNLVSSNATFELGFFSPAEKSGGKYLGIWYHGLEPQTVVWVANRDHPVPDSTGVFRIAEDGNLVVEYAFRSLWSSGLGASSSSNRTLQLLDSGNLVLKEDDSEATYLWESFKNPTDTFLPGMKMDATMSLTCWKDSANPAPGNFTFKLTQQAEKRSFVVQYHSKIHWAPDEFDTEAASQVVFNLLNNDIWSTKTYNYSNKTVFVSQPYMYYKSRLLMNSRGEIVFLEWDEAESNWTKIWSGPENKCDIPDYCGSFGLCNKDNFIQCRCLPGFSSIQGFPSDRESESQGCARKSTTCTSTNEGVMFLNLTNIKVADPDEEINTETEGKCQSMCINMCPQSQCQAYSFNSTTYGDRGSYSCNIWKRPLSSLVENYLRGHDLSIMVKKSDIAPTAKSCEPCGTYAIPYPLSNGSNCGDPMYNYFNCNKSSGKVSFTMPGGKSYQVTWIDEDSRMFSIQTNYFNSFNYSFSSQNSTDFPFKVQYNEDAVIKINWLPAPEPPCSQLTDCMNWPHSTCRATREGGSRCHCDSNYNWNNTLMSCTQEEQSGNHSTRLELILLATLGSLAAVTCIIAFGIVWRKKKSLKHDRASSQIQESLYESERHVKGLIGLGSLEEKDIEGIEVPFYTFASILAATDSFSDSNKLGRGGYGPVYKGTFPGGQEIAVKRLSSVSTQGLQEFKNEVILIAKLQHRNLVRLRGYCIKGDEKILLYEYMPNKSLDSFIFGETPYSFTQPIL 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14471g00001 770 PIRSF SRK 3 441 IPR024171 GO:0004674
Vium14471g00001 770 PIRSF SRK 454 585 IPR024171 GO:0004674
Vium14471g00001 770 PIRSF SRK 536 766 IPR024171 GO:0004674
Vium14471g00001 770 Gene3D Phosphorylase Kinase; domain 1 646 747 - -
Vium14471g00001 770 CDD B_lectin 37 152 IPR001480 -
Vium14471g00001 770 ProSiteProfiles Bulb-type lectin domain profile. 26 148 IPR001480 -
Vium14471g00001 770 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 173 IPR036426 -
Vium14471g00001 770 ProSiteProfiles PAN/Apple domain profile. 334 424 IPR003609 -
Vium14471g00001 770 SUPERFAMILY Protein kinase-like (PK-like) 655 764 IPR011009 -
Vium14471g00001 770 SMART blect_4 33 152 IPR001480 -
Vium14471g00001 770 ProSiteProfiles Protein kinase domain profile. 672 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium14471g00001 770 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 639 747 - -
Vium14471g00001 770 Gene3D - 20 150 IPR036426 -
Vium14471g00001 770 FunFam Receptor-like serine/threonine-protein kinase SD1-8 19 149 - -
Vium14471g00001 770 Pfam Protein tyrosine and serine/threonine kinase 675 757 IPR001245 GO:0004672|GO:0006468
Vium14471g00001 770 Pfam D-mannose binding lectin 75 165 IPR001480 -
Vium14471g00001 770 SMART ntp_6 338 423 IPR003609 -
Vium14471g00001 770 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 9 757 - -
Vium14471g00001 770 Pfam S-locus glycoprotein domain 235 311 IPR000858 GO:0048544
Vium14471g00001 770 Pfam PAN-like domain 334 405 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14471g00001 Vium-Chr14471 4125 6966 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14471g00001 532 758 Receptor kinase-like Gene Family AT4G21410 39.035 4.65e-38 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium14471g00001 PK_Tyr_Ser-Thr 2.7e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14471g00001 - - var:108332879 1410.97