Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1446g00025 ATGGGAGAAAATGATGATCACAACAACCATTGTAATGAAGAAACAGAATCAAAAGATGCAAAAAGAAGCCTGGCTGAGAGAAGAGGGTTCAATTCAAATGCTGCAAAAATCAATACAGCACTGTTTTGTAGTGACACTACAACAAACCCTTCTCCTTCTCCTGCTACTCATCTCACCATTCCTCCTGGAATCAGTCCCACTGCATTGCTGGACTCTCCTATTATGCTTCCAAATTCTCAGGCAACACCATCATCTCCCACCACGGGGAGTTTCTTCGTGATGTCAAATCTTCTTCCCTATTCTGCTCTGAATCAGGTTTCTAGTAATTTCCACTCGGTAAAGGGAGGGAATAGAGAAAGCCAACTACCTCCTCAAGTTCAGTCACCATTAGATTTTTCATTCCCAGCAGATTTTTCAAAAGGGCATTCTGTGAAAAATAGTGAAGTAAATTCATACAATGATATGAAAATGGTAAATGATAAGATTGTTAATGGCAATAATGTTGAGAAGCCAATCTCTGGTTCTGAAGAAGTAAGCGATGAAAGTGCTGTGCCGAAAAACGGTATCAACAGTGAGGATATTGTAGGACAACCTGCTTCAGAAGGAGAACTGAAAGAAGCATCTCATGCAACAGGAGTGGTAAGGACCTCAGAGGATGGTTACAATTGGAGAAAGTATGGACAAAAACAGGTAAAAGGTAGTGAGTATCCCAGAAGCTATTATAAATGTACACAACCTAATTGTCTGGTCAAGAAAAAGGTGGAACGATCCCATGATGGTCAAATTACAGAAATCATCTACAAGGGTAATCATAACCATGTAAAACCACACTCTAGTCATAGAGGATCTGCACTTTCTACAGATGAGGTTTCAGACATGGCTGAAGAAGGTGCATTGGCTAAAGTTGATGGTGGGTTCATGTGGAGAAATATTCAGTCAGGAATAAAAGATTCAAAAAACAGTTTAGATTGGAAGGCTGATGGTCAGGAAAGGACATCACCAACTTCTGGTGTGACTGAGATTTCAGATCCTATATCAACCAACAAAGCTAAATCTCTATCCGTGTTTGAATCGGAGGAGACTCCAGAGCTTTCTTCTTCACTTGCTAGTCATGATATGGAAGAAGATGGAGCCACTCAAGCAATTGTTGAAGATGAAGCTGAGAATGATGAATCGGAACCTAAAAGAAGAAAGAAAGAGAACTATGCAGCTGAATCAAATTTGCCCCCTAGGTCTGTTCGTGAGCCAAGAGTGGTAGTCCAAATTGAGAGTGATGTGGACATACTTGATGATGGTTACCGCTGGCGTAAGTATGGACAGAAGGTTGTCAAAGGAAATCCAAATCCTAGGAGCTACTACAAATGCACAAGTGCTGGGTGTATGGTAAGGAAACATGTGGAAAGGGCTTCACACAATCTAAAATATGTTCTTACTACTTATGAGGGAAAACACAATCATGAAGTGCCCACTGCAAGAACCAACAATCAGATAAACTCAAGTGATGGTGGTTTACACCCCAATGGTGTCAATGGGCAAGTGGGTCTTGCTTTACCAGGGAGTGCTGGCATTAAGCATGAGACTCATCAAACTCTTGCACATCATTTTGATAGAAAACCTGAATTCAGCAATGATTTTCTCAGGCCTAGTTTGATTGGAAGTTTCGGTAGTGACATGAAGTTTCCTCCTTCTTCCCTTTGCCAAATGAAGTATCCTTCCTTGAATAACACCATGCCTTATAGCTCCTATGGACTGAACCCTGATCGTTGTGCTGCACCTCAATCTGGATCCATTTCCTCAATGTTCCCTGATTTTCCAATGCCACTACCATTGAATCTTCCCTCATCTGGAAAATTTTCAATTGCTGGACTTAACTTTAACTGTGCCAAACCAATAAATCCTATCCAATCTTTCCTTTCTGGACAGCAAGTGAAGGACATTGATGCAGTATTTCTGAGGCCTAAGCAGGAACAGAAGGATGATGCTATATATGGCTCCTGCATCCCCTCACTAGATGCAAATGCCTCACTCTCTTCTTCTTCAGCACCACCGTCCATTTATCAACGAGTCATGCAAAATTTCCCTTCATAA 2088 0.4128 MGENDDHNNHCNEETESKDAKRSLAERRGFNSNAAKINTALFCSDTTTNPSPSPATHLTIPPGISPTALLDSPIMLPNSQATPSSPTTGSFFVMSNLLPYSALNQVSSNFHSVKGGNRESQLPPQVQSPLDFSFPADFSKGHSVKNSEVNSYNDMKMVNDKIVNGNNVEKPISGSEEVSDESAVPKNGINSEDIVGQPASEGELKEASHATGVVRTSEDGYNWRKYGQKQVKGSEYPRSYYKCTQPNCLVKKKVERSHDGQITEIIYKGNHNHVKPHSSHRGSALSTDEVSDMAEEGALAKVDGGFMWRNIQSGIKDSKNSLDWKADGQERTSPTSGVTEISDPISTNKAKSLSVFESEETPELSSSLASHDMEEDGATQAIVEDEAENDESEPKRRKKENYAAESNLPPRSVREPRVVVQIESDVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCMVRKHVERASHNLKYVLTTYEGKHNHEVPTARTNNQINSSDGGLHPNGVNGQVGLALPGSAGIKHETHQTLAHHFDRKPEFSNDFLRPSLIGSFGSDMKFPPSSLCQMKYPSLNNTMPYSSYGLNPDRCAAPQSGSISSMFPDFPMPLPLNLPSSGKFSIAGLNFNCAKPINPIQSFLSGQQVKDIDAVFLRPKQEQKDDAIYGSCIPSLDANASLSSSSAPPSIYQRVMQNFPS 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1446g00025 695 MobiDBLite consensus disorder prediction 389 404 - -
Vium1446g00025 695 MobiDBLite consensus disorder prediction 318 410 - -
Vium1446g00025 695 MobiDBLite consensus disorder prediction 327 368 - -
Vium1446g00025 695 FunFam WRKY transcription factor 205 277 - -
Vium1446g00025 695 SUPERFAMILY WRKY DNA-binding domain 215 276 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium1446g00025 695 MobiDBLite consensus disorder prediction 1 27 - -
Vium1446g00025 695 FunFam WRKY transcription factor 57 415 489 - -
Vium1446g00025 695 Gene3D WRKY domain 416 482 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium1446g00025 695 MobiDBLite consensus disorder prediction 170 192 - -
Vium1446g00025 695 ProSiteProfiles WRKY domain profile. 424 489 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium1446g00025 695 Gene3D WRKY domain 205 277 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium1446g00025 695 MobiDBLite consensus disorder prediction 1 26 - -
Vium1446g00025 695 Pfam WRKY DNA -binding domain 218 273 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium1446g00025 695 Pfam WRKY DNA -binding domain 430 487 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium1446g00025 695 SUPERFAMILY WRKY DNA-binding domain 422 489 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium1446g00025 695 SMART WRKY_cls 217 275 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium1446g00025 695 SMART WRKY_cls 429 488 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium1446g00025 695 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 70 509 IPR044810 GO:0003700
Vium1446g00025 695 ProSiteProfiles WRKY domain profile. 212 276 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1446g00025 Vium-Chr1446 251559 255482 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1446g00025 3 492 WRKY Transcription Factor Family AT5G56270 39.098 1.74e-89 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium1446g00025 WRKY 7.2e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1446g00025 K18835 - gmx:100800211 1080.47