Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1446g00019 ATGGGGTCCTGCTTCTCTGCGGAAAGCAGGAGCCCTCACCCCACTTCACCCTCTACATCTTTTCGGAAGCGCAAGAGCAACGCCAAGAAGAGGCTTGGATCAAGAGCTTCTTCCTTTGAGTATTGGAGGAATGAGCCTCTCCATAGGATCCCTGGGAGGATCTTCCTCAATGGCTCCTCCCAAGTTGCATCCTTGTTCACTCAGCAAGGCAAGAAGGGTACCAACCAGGATGCCATGGTGGTTTGGGAGAACTTTTGTTCTAGACAGGATACTATTTTCTGTGGAGTTTTTGATGGCCATGGTCCATATGGTCACATGGTTGCAAAAAGAGTGAGAGATTCTCTTCCTCTTAAACTGAATGCCCATTGGGAAGTTAATGTTCCTGGTGAGGAAGTCCTCAAGGAGATTAGCGGTAATGCTGCAGGAAGCATGAATATAGAAGAGGCTGCCTCTGCATCTGCTGATGAGGATTCTCGGGTATCTCTTAATGCTGAAGAAACAGAAAAGCACCCTGAAATCTTTCAGACACTCAAGGAATCCTTTTTGACGGCATTCAAAGTTATGGATAGGGAACTGAAGACCCACCAAAGTATTGATTGTTTTTGTAGCGGAACAACAGCAGTAACTCTGATTAAGCAGGGCCTTGATCTTATCGTTGGAAATGTTGGTGACTCTAGAGCTGTGTTGGGTACAAGAGAGAATGATGATTCTCTTGTCGCTGTCCAGTTAACTGTGGATCTGAAACCCAATCTTCCAGCCGAAGAAGAGAGAATTCGCAAATGTAAAGGCCGTGTTTTTGCTCTTCAGGATGAACCCGAAGTAGCACGTGTCTGGTTGCCGAACAATGACTCGCCAGGCCTTGCCATGGCCAGGGCATTTGGTGATTTTTGTCTTAAAGATTTTGGCCTGATATCTGTTCCAGAGATGTCATACAGAAGACTGACCGAAAAAGACGAGTTCATTGTCTTAGCAACAGATGGGATTTGGGATGTTCTCTCAAACAAAGAAGTGGTGGACATAGTGGCGGCCACATCAAGGCGTGCCTCAGCTGCTCGAGCCCTGGTCGAGTCAGCAGTTCGCGCTTGGAGGTACAAGTATCCAACCTCCAAAGTGGATGACTGTGCTGTGGTTTGCCTCTTTTTGGACTCTGCCTCACACAAAGTATGCAGTGCTTCCATTGCCAAGTCCAAGGAGCAACCTGGTTCGACCGTCCAAGTCCACAATGGCAACAGGGGAGACGTTTTGGCCCCGACCGGGCTGGGAAGGTCAGGAACATGCAGGGAGAACGATGAAGGTGATGACAGCAACAAGAATGAGGAGGAGAAAGAGTGTAGGGAAGAGGAAATAGATCCTGAGTCAGAAATAGAATGGTCTGCTCTTGAAGGAGTGTCTCGTGTGAACACATTGCTAAACCTGCCAAGGTTTGAACCTGACAAAGAAGACAAGGGGATGAGAAAACAAAATTGA 1467 0.4758 MGSCFSAESRSPHPTSPSTSFRKRKSNAKKRLGSRASSFEYWRNEPLHRIPGRIFLNGSSQVASLFTQQGKKGTNQDAMVVWENFCSRQDTIFCGVFDGHGPYGHMVAKRVRDSLPLKLNAHWEVNVPGEEVLKEISGNAAGSMNIEEAASASADEDSRVSLNAEETEKHPEIFQTLKESFLTAFKVMDRELKTHQSIDCFCSGTTAVTLIKQGLDLIVGNVGDSRAVLGTRENDDSLVAVQLTVDLKPNLPAEEERIRKCKGRVFALQDEPEVARVWLPNNDSPGLAMARAFGDFCLKDFGLISVPEMSYRRLTEKDEFIVLATDGIWDVLSNKEVVDIVAATSRRASAARALVESAVRAWRYKYPTSKVDDCAVVCLFLDSASHKVCSASIAKSKEQPGSTVQVHNGNRGDVLAPTGLGRSGTCRENDEGDDSNKNEEEKECREEEIDPESEIEWSALEGVSRVNTLLNLPRFEPDKEDKGMRKQN 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1446g00019 488 Gene3D - 57 384 IPR036457 -
Vium1446g00019 488 MobiDBLite consensus disorder prediction 426 444 - -
Vium1446g00019 488 Pfam Protein phosphatase 2C 163 360 IPR001932 -
Vium1446g00019 488 CDD PP2Cc 61 381 IPR001932 -
Vium1446g00019 488 SUPERFAMILY PP2C-like 55 382 IPR036457 -
Vium1446g00019 488 MobiDBLite consensus disorder prediction 1 22 - -
Vium1446g00019 488 MobiDBLite consensus disorder prediction 1 32 - -
Vium1446g00019 488 ProSiteProfiles PPM-type phosphatase domain profile. 62 381 IPR001932 -
Vium1446g00019 488 PANTHER PROTEIN PHOSPHATASE 34 379 IPR015655 GO:0004722|GO:0006470
Vium1446g00019 488 SMART PP2C_4 53 379 IPR001932 -
Vium1446g00019 488 MobiDBLite consensus disorder prediction 399 453 - -
Vium1446g00019 488 FunFam probable protein phosphatase 2C 33 57 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1446g00019 Vium-Chr1446 170424 174658 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1446g00019 1 479 PP2C-type Phosphatase Gene Family AT3G02750 62.571 0.0 609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1446g00019 - - gmx:100790373 826.239