Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1446g00018 ATGGTCATGGAAAATCAAAACTTGCTACCACTCTTCGTCATCCTTTTCTTGGCTCATTGGATCCATGTTCAAGCTGCTCCTCCTCACTCTCTCGTCACACAACTCCCTGGCTTCAGCTCCAGTTTCCCATCCAACCACTATTCAGGATATATAAGTATTGATGGAGATTATGAGAGTGGGAAGAACCTGTTCTACTACTTGGTGAGCTCAGAAAGAAGTGCAGAGAAGGACCCAGTGGTGCTATGGCTGAATGGTGGACCTGGGTGTTCAAGCTTCGATGGCTTCGTTTATGAGCATGGACCATTCAACTTTGAGGCTGCAAATTCAAAAGAGAATCTACCCACTTTGCATATCAATCCATACAGCTGGTCAAAGGTTTCTAACATTATATATTTGGATTCTCCTGCTGGTGTTGGACTCTCTTATTCCAAGAACACCAGCAAATATGCCACTGGGGACCTGCAAACTGCGTCTGATACCCATCTTTTTCTCTTAAAGTGGTTTCAGCAATTCCCAGAATTTCAGGCTAATCCATTTTATATTGCTGGAGAGTCTTACGCTGGAGTTTATGTGCCTACTCTGGCTTTTGAAGTTGCTAAAGGAATCCAGAGTGGTACAAAGCCCGTGATCAATTTTAAGGGTTACATGGTTGGAAATGCTGTCACGGACGAAAGATTTGATGGCAATGCTCTCATCCCATTTGTGCATGGGATGGGCCTCATATCAGACAGTATCTACGAGGATTTACAAGCTACATGCAAAGGAAACTACTACGATGCTTACTCTTTGGACGAAAATGATCCGTGTTATAAGAGCATTGTAAAAGTTGATAGGGCCATTGATGGGCTTAACGTGTACAATATACTCGAGCCATGCTACCACTTCCCTGACACAACCAAAGAAAATGGAAGCTTACCAACAAGTTTCAAGCAATTAGGAGTTACTGAGAAGCCTCTCCCAGTGAGGAAGAGAATGTTTGGAAGAGCATGGCCTTTTCGAGCACCAGTCAAACCTGGTCTTGTCACATTATGGCCTGAATTGGCCGAAAAGACTCAAACGAGGCATGTCGCTTGTGTTAATGATGAAGTAGCAAGCTCATGGCTGAACAACGATGCTGTCAGGAAAGCCATTCATGCTGGATCGGAAAGTGTGGCAGGTGCATGGGAGTTATGTACAGATAGGATAGAGTACGATCACAATGCTGGAAGCATGATTCCCTACCACAAGAACCTAACCAAGATGTGCTACAAGGCACTTATTTTCAGTGGTGACCATGATATGTGTGTACCATTTACTGGAAGTGAGGCTTGGACTCGATCTCTGGGATATAAGATCGTGGACGAATGGAGGCCATGGAACTCAAACGACCAAGTTGCTGGGTACTTGCAAGAATACGAGAACAATCTCACATTCCTAACAATCAAGGGAGCTGGGCACACCGTGCCGGAATATAAGCCACGGGAAGCGTTGGAATTCTTCAGCCATTGGTTGGAAGGAAAGACAATATAA 1509 0.4453 MVMENQNLLPLFVILFLAHWIHVQAAPPHSLVTQLPGFSSSFPSNHYSGYISIDGDYESGKNLFYYLVSSERSAEKDPVVLWLNGGPGCSSFDGFVYEHGPFNFEAANSKENLPTLHINPYSWSKVSNIIYLDSPAGVGLSYSKNTSKYATGDLQTASDTHLFLLKWFQQFPEFQANPFYIAGESYAGVYVPTLAFEVAKGIQSGTKPVINFKGYMVGNAVTDERFDGNALIPFVHGMGLISDSIYEDLQATCKGNYYDAYSLDENDPCYKSIVKVDRAIDGLNVYNILEPCYHFPDTTKENGSLPTSFKQLGVTEKPLPVRKRMFGRAWPFRAPVKPGLVTLWPELAEKTQTRHVACVNDEVASSWLNNDAVRKAIHAGSESVAGAWELCTDRIEYDHNAGSMIPYHKNLTKMCYKALIFSGDHDMCVPFTGSEAWTRSLGYKIVDEWRPWNSNDQVAGYLQEYENNLTFLTIKGAGHTVPEYKPREALEFFSHWLEGKTI 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1446g00018 502 Gene3D - 355 501 - -
Vium1446g00018 502 Gene3D alpha/beta hydrolase 25 323 IPR029058 -
Vium1446g00018 502 PRINTS Carboxypeptidase C serine protease (S10) family signature 119 131 IPR001563 GO:0004185|GO:0006508
Vium1446g00018 502 PRINTS Carboxypeptidase C serine protease (S10) family signature 132 142 IPR001563 GO:0004185|GO:0006508
Vium1446g00018 502 PRINTS Carboxypeptidase C serine protease (S10) family signature 469 482 IPR001563 GO:0004185|GO:0006508
Vium1446g00018 502 PRINTS Carboxypeptidase C serine protease (S10) family signature 167 192 IPR001563 GO:0004185|GO:0006508
Vium1446g00018 502 ProSitePatterns Serine carboxypeptidases, serine active site. 181 188 IPR018202 GO:0004185
Vium1446g00018 502 FunFam Carboxypeptidase 404 499 - -
Vium1446g00018 502 FunFam Carboxypeptidase 357 501 - -
Vium1446g00018 502 Pfam Serine carboxypeptidase 36 499 IPR001563 GO:0004185|GO:0006508
Vium1446g00018 502 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 31 486 IPR001563 GO:0004185|GO:0006508
Vium1446g00018 502 SUPERFAMILY alpha/beta-Hydrolases 32 500 IPR029058 -
Vium1446g00018 502 ProSitePatterns Serine carboxypeptidases, histidine active site. 469 486 IPR033124 GO:0004185
Vium1446g00018 502 FunFam Carboxypeptidase 25 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1446g00018 Vium-Chr1446 162137 167586 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1446g00018 363 502 Calmodulin-binding Proteins AT2G22960 47.857 1.15e-40 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1446g00018 K16296 - gmx:100790895 921.768