Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1446g00014 ATGTGTGGGATTTTCGCGTATCTGAATTTCAAGGTGAACAGAGAGCGAAGGTACATCTTGCAAGTTCTCTTCAATGGCTTACGCAGATTGGAGTATCGTGGATACGATTCAGCCGGCATCGCCATTGATTCCTCTTCTCAATGCTGTTCCGATGGCGAATTCGCTCTCGCTCATCCGCTTCTCCCTCCTCTCGTTTTCCGCCAAGAAGGAAACATCGAATCGCTCGTCAAATCTGTGTACAAAGAAGTGGGAAAAATCAATTTGAATTTGGAGGAGCTATTCAGCACGCACGCCGGAATTGCGCATACTCGGTGGGCTACTCACGGAGAGCCTGCTCCGCGGAACAGTCATCCTCAGACCTCTGGCCCGGAAAACGAGTTTTTGGTTGTTCACAATGGAGTGATCACTAACTATGAGGTTTTGAAGGAGACGCTGTTGCGGCATGGCTTCACCTTCGAATCGGAGACTGACACTGAGGTCATTCCCAAGCTTGCGAAGTTTGTCTACGACAAGGCCAACGAAGCTGCAGATGGTCAGGTTGTTACCTTCAGTCAGGTTGTTTTGGAAGTTATGAGGCATCTTGAAGGAGCTTACGCCCTTATTTTCAAAAGTCCACATTATCCTAATGAATTGATTGCTTGCAAGCGTGGTAGCCCACTGCTCCTAGGTGTTAAAGAATTGACAGAAAATAAAGGCAATGGTTCGGCATTTGAGGATGAAAAATTCCTATCAAAAGATGACAAACCCAAAGAATTGTTTTTGTCCAGTGATGCCAATGCTGTGGTTGAACACACAAAGAAAGTGCTAGTTATTGAGGATGGTGAAGTAGTTCATCTCAAGGATGGTGGGGCTTCTATTTTGAAGTTTGACAGTAACGTGGGAGAAAATGGGGCTTTTCTTTCTAGAACTTGTTCAGTGAGACGTGCATTATCTGTTCTTGAGATGGAGGTTGAGCAAATAAATAAAGGTCATTATGAGCATTATATGCAGAAGGAAATTCATGAGCAACCGGAATCTCTAACAACCACAATGAGGGGGAGGCTTATACGTCTTGGAGCCAACAAATCCAAGTCCGTTCTATTGGGTGGACTGAAAGATCATCTCAAAACAATTAGGCGTAGTAGAAGGGTAGTTTTTATTGGTTGTGGTACAAGTTATAATGCTGCTTTGGCAGCTAGACCCATCTTGGAAGAACTTTCTGGTGTTCCTGTTACTATGGAAATTGCAAGTGATTTATTGGACCGGGAGGGACCGATATATAGGGAAGATACTGCTATTTTTGTTAGTCAGTCTGGTGAAACGGCTGATACTTTACTCGCACTGGAGTATGCTTTAGAGAATGGTGCACTGTGTGTTGGGATAACAAACACTGTTGGTAGTGCAATAGCAAGGAATACTCATTGTGGTGTTCACATAAATGCTGGTGCTGAGATTGGTGTGGCAAGTACCAAGGCATACACGAGTCAGATAGTGGTGATGGTCATGTTAGCTCTTGCAATAGGAGGTGATACTATTTCAAATCAAGCCAGAACAGAAGCTATCATAGATGGTCTTTTTGACCTGCCAAATAAAGTGAGAGACGTGCTGAAACTTGACCAGGAGATGAAGGATCTAGCAAAGCTGTTGATTGCTGAGCAGTCTCTTCTCGTCTTCGGAAGAGGGTACAACTATGCAACTGCTCTTGAGGGAGCTTTGAAAGTAAAGGAAGTGGCACTCATGCACAGCGAAGGGATACTTGCTGGTGAAATGAAGCATGGTCCTTTGGCATTAGTTGATGAAAATCTTCCAATTCTTGTTGTAGCTACTCGTGATGCTTGCTTCAGCAAACAGCAGTCTGTTATTCAGCAACTTCATGCTCGCAGAGGTCGTCTGATTGTTATGTGTTCTAAAGGGGATGCTTCCTCTGTATGCCCTAATGAATCTTGTAGGGTAATTGAAGTTCCTCAAGTTGAAGACTGTCTTCAACCTGTAATTAATATAGTTCCATTGCAGTTATTGGCATATCACCTCACTGTTCTCAGGGGATTTAATGTGGACCAGCCTCGTAATCTTGCCAAGAGCGTCACAACGCAATGA 2076 0.4408 MCGIFAYLNFKVNRERRYILQVLFNGLRRLEYRGYDSAGIAIDSSSQCCSDGEFALAHPLLPPLVFRQEGNIESLVKSVYKEVGKINLNLEELFSTHAGIAHTRWATHGEPAPRNSHPQTSGPENEFLVVHNGVITNYEVLKETLLRHGFTFESETDTEVIPKLAKFVYDKANEAADGQVVTFSQVVLEVMRHLEGAYALIFKSPHYPNELIACKRGSPLLLGVKELTENKGNGSAFEDEKFLSKDDKPKELFLSSDANAVVEHTKKVLVIEDGEVVHLKDGGASILKFDSNVGENGAFLSRTCSVRRALSVLEMEVEQINKGHYEHYMQKEIHEQPESLTTTMRGRLIRLGANKSKSVLLGGLKDHLKTIRRSRRVVFIGCGTSYNAALAARPILEELSGVPVTMEIASDLLDREGPIYREDTAIFVSQSGETADTLLALEYALENGALCVGITNTVGSAIARNTHCGVHINAGAEIGVASTKAYTSQIVVMVMLALAIGGDTISNQARTEAIIDGLFDLPNKVRDVLKLDQEMKDLAKLLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVVATRDACFSKQQSVIQQLHARRGRLIVMCSKGDASSVCPNESCRVIEVPQVEDCLQPVINIVPLQLLAYHLTVLRGFNVDQPRNLAKSVTTQ 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1446g00014 691 CDD SIS_GlmS_GlmD_2 533 689 IPR035490 -
Vium1446g00014 691 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 2 302 IPR029055 -
Vium1446g00014 691 Gene3D - 323 690 - -
Vium1446g00014 691 ProSiteProfiles Glutamine amidotransferase type 2 domain profile. 2 282 IPR017932 -
Vium1446g00014 691 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 2 288 IPR029055 -
Vium1446g00014 691 FunFam Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 323 545 - -
Vium1446g00014 691 ProSiteProfiles SIS domain profile. 538 681 IPR001347 GO:0097367|GO:1901135
Vium1446g00014 691 CDD GFAT 2 279 IPR047084 -
Vium1446g00014 691 Gene3D - 527 676 - -
Vium1446g00014 691 FunFam Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 2 2 302 - -
Vium1446g00014 691 SUPERFAMILY SIS domain 322 690 IPR046348 GO:0097367|GO:1901135
Vium1446g00014 691 Pfam Glutamine amidotransferase domain 93 201 - -
Vium1446g00014 691 CDD SIS_GlmS_GlmD_1 376 501 IPR035466 -
Vium1446g00014 691 PANTHER GLUCOSAMINE--FRUCTOSE-6-PHOSPHATE AMINOTRANSFERASE, ISOMERIZING 1 691 - -
Vium1446g00014 691 ProSiteProfiles SIS domain profile. 367 506 IPR001347 GO:0097367|GO:1901135
Vium1446g00014 691 Pfam SIS domain 371 498 IPR001347 GO:0097367|GO:1901135
Vium1446g00014 691 Pfam SIS domain 542 673 IPR001347 GO:0097367|GO:1901135
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1446g00014 99 223 PRT Gene Family AT4G38880 28.682 1.80e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1446g00014 K00820 - gmx:100792835 1221.45