Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14439g00005 ATGGGGAGTATGAGTGACTCAGACCGAAAACGACGTCACTTTAGCTCCTTGTCCCCAACACCTGCAACTGCTACTGCCAAGAAGCTACCCTTCTTGCCTGTTTCTGAAGACAAAAAGCTTGACATTGTTGTACTTCAGTATCAAAATCAAAAGCTTACCCAAAAGTTAGAAACTCAGAAGTTAGAGTATGCAGCTCTAGACAATAGGTTTACTCAACTGAAGGAGAGGCAAAAGTCATATGATCCCACTTTAGCAGTGGTCAAGAAATCTTGGGAGCAGATGGTCAATGATTTGGAGTTGTGTTCTGAACATATGAGAGAGTCAAGTGGCAAATCAAATTATAGATTTGTATCAATCATGGAAGATGGTGGTCCATCTACTGTTCAGGATGTGTTTCTTAACCGTCTAATGCAAACTGGTGCAACTGAATGTGCAACTGCGTATAACTTTGCAAACCAGACTGAAGAACATCAAAAAGTTATTACTGAAAAAGCTAGAAGTATTTTAAAAAATATGGCAACAGCTGTTAATAATGTTTGGGTTCTGATGGATGGATTGCATACTGCATCACTGAAAAAGCTTCCTGTGGATGTTTTTTGTAGGCAGAAATTGTCCTCTGATCTAGATGTGAAAGTTAAAAACTTGAGATTGGAATTCAGCGAACTACATTCAAAGCACAAGTCTTTATCAAGTGAATTCCAAATTCAGCGAGATAATGATGCAAAAAATAAAGCTGACCTTGAAAGACTGAAAGGGGAACTGGCTAGTGCTGTTGCAGAATTAGAAGAAAGCAATCACAAACTTGCAACTCTTAAGGCTGAGAGAGATGCTGCAAAAGGGGCAGTTCTCCCAGTCTTAAATGTTGGAAGTACACACATTCCTAGTGATAAGATCAGAGATAAGCAAAAGGACTTACAAGATATGGAATCTACTTTGAAGGAGCTATTGGACCAAAGTTCTACTCGATTAATTGAACTGAAAAGTCTTCATGAGGAAAGAATAAGAATATTGCAGCAGTTGTGTGATCTACAGAACACTTTGAAGAATTTCAAGTGTATTACTTCATCCCATGCTTACCAATTGGTTAGAGATCAGATAGAAAAGTCAAAATCAGATGTTCTGGAGTATCAGGCCTTATATGAGAAACTACAGGTTGAGAAGGATAATCTTACTTGGAGGGAGCGGGAGTGGTACATTAAAAATGATTTAGCAGATATTTTTCAAAGATCTGTGACAGTTTCAGATTTTAGAGTGGCTCATCTACACTCTGAGATACAGAAAAAGATAGAGGAAGGAAATATGATTGAAAATAAGCTGAAAGAAGAAGCAAGAGAACCAGGAAGGAAACAGATTATTGCTGAATTCAAATCTCTGGTTTCTTCATTTCCTGAGGAAATGGGGTCTATGCAAAGCCAACTAAGAAAATATAAAGAATCAGCTTCAGATATCCATTCATTGCGTGCAAATGTGCAGTCTGTTTCTAGTATTCTTGACAGGAAGGTAAAAGAATGTGATGCATTTTCTGTTAGGTCTGCAAGTCAACTTGCTGAGATAGAGAGGCTGCTTGGTGTGTTTCAAGATTTGAGAGAAAGCGAACAGGACCTGAAGTTGATGTTAGAAATGTTTAGACGCGAGTCCATTGATTCAAGGGATATCATGGATGCACGGGAAGCAGAATATAGAGCATGGGCACATGTTCAAAGTTTAAAATCATCACTCGATGAGCACAACTTGGAACTTCGAGTTAAGAAAGCCAATGAAGCAGAGGCCAGATCACAACAGAAGCTGGCTGCTGGTGAAGCTGAGATTGCGGACATGAGACAGAAATTAGAAGATTCTAAAAGGAAAATGTGTGATCTGTCTGATATCTTGAAGTCTAAGAACAAACAAAATGAGAACTACTTGTCTGAAATAGAGAGTATTGGACAAGCATATGATGACATGCAAACTCAAAACCAACATCTGCTGCAGCAAATTACTGAAAGAGATGATTACAATATTAAGCTTGTTTTGGAGGGTGTAAGGGCAAGGCAGAAGCAGGATTCTTTGCTCATGGAAAAGCGGGTAATTGAACAAGATATGCAGCAAGCGAACACATCCCTGAATTTATATGATATTAAAGCTTCAAGAATTGAAGAACAGTTGAAGTTTTGTTCGGATGAGCTTCAAAGACTTGCAGAGGATAAGCTTCAATGTTCTGTCACTTCAGAAAATACACAAAGAAGGCTGTCTGATATTAGAAGACAAACTCAACAGATTAGGGATACAGTGGTCGAATTGCAATCAAAAATTGGTAGTAATAGGGTGACACGTATGGAGTTACGAGTAGAACTTGAGAAAGAAAGGTTTGCCAAGAAAAGAACTGAGGAGGATTTGGAGGTCGCTAGGAGAAAGTTTTCACGCCTTAAAGAACAGAATGAGGGATCTTCAATAACTGAAAAGCTTCAACAAGAACTTGAAGAGTACAGGGAAATTATCAAGTGCAGTATCTGTCAAGATAGGGCAAAAGAGGTGGTAATTACAAAATGCTACCACTTGTTCTGCTTCTCATGTATCCAGAAAGTTGCTGGGAGTAGGCATCGGAAGTGTCCGCAGTGTGCTACAAGCTTTGGGGTTAATGATGTGAAGTCTGTTTATTTGTAA 2643 0.3882 MGSMSDSDRKRRHFSSLSPTPATATAKKLPFLPVSEDKKLDIVVLQYQNQKLTQKLETQKLEYAALDNRFTQLKERQKSYDPTLAVVKKSWEQMVNDLELCSEHMRESSGKSNYRFVSIMEDGGPSTVQDVFLNRLMQTGATECATAYNFANQTEEHQKVITEKARSILKNMATAVNNVWVLMDGLHTASLKKLPVDVFCRQKLSSDLDVKVKNLRLEFSELHSKHKSLSSEFQIQRDNDAKNKADLERLKGELASAVAELEESNHKLATLKAERDAAKGAVLPVLNVGSTHIPSDKIRDKQKDLQDMESTLKELLDQSSTRLIELKSLHEERIRILQQLCDLQNTLKNFKCITSSHAYQLVRDQIEKSKSDVLEYQALYEKLQVEKDNLTWREREWYIKNDLADIFQRSVTVSDFRVAHLHSEIQKKIEEGNMIENKLKEEAREPGRKQIIAEFKSLVSSFPEEMGSMQSQLRKYKESASDIHSLRANVQSVSSILDRKVKECDAFSVRSASQLAEIERLLGVFQDLRESEQDLKLMLEMFRRESIDSRDIMDAREAEYRAWAHVQSLKSSLDEHNLELRVKKANEAEARSQQKLAAGEAEIADMRQKLEDSKRKMCDLSDILKSKNKQNENYLSEIESIGQAYDDMQTQNQHLLQQITERDDYNIKLVLEGVRARQKQDSLLMEKRVIEQDMQQANTSLNLYDIKASRIEEQLKFCSDELQRLAEDKLQCSVTSENTQRRLSDIRRQTQQIRDTVVELQSKIGSNRVTRMELRVELEKERFAKKRTEEDLEVARRKFSRLKEQNEGSSITEKLQQELEEYREIIKCSICQDRAKEVVITKCYHLFCFSCIQKVAGSRHRKCPQCATSFGVNDVKSVYL 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14439g00005 880 Coils Coil 298 318 - -
Vium14439g00005 880 MobiDBLite consensus disorder prediction 1 15 - -
Vium14439g00005 880 ProSitePatterns Zinc finger RING-type signature. 843 852 IPR017907 -
Vium14439g00005 880 PANTHER RING FINGER PROTEIN-RELATED 1 880 IPR013956 GO:0004842|GO:0010390
Vium14439g00005 880 Coils Coil 596 616 - -
Vium14439g00005 880 Coils Coil 708 728 - -
Vium14439g00005 880 CDD RING-HC_Bre1-like 820 878 - -
Vium14439g00005 880 Coils Coil 366 386 - -
Vium14439g00005 880 Pfam Zinc finger, C3HC4 type (RING finger) 827 868 - -
Vium14439g00005 880 ProSiteProfiles Zinc finger RING-type profile. 828 866 IPR001841 -
Vium14439g00005 880 Coils Coil 778 805 - -
Vium14439g00005 880 Coils Coil 244 281 - -
Vium14439g00005 880 Coils Coil 566 586 - -
Vium14439g00005 880 Coils Coil 49 76 - -
Vium14439g00005 880 MobiDBLite consensus disorder prediction 1 23 - -
Vium14439g00005 880 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 809 880 IPR013083 -
Vium14439g00005 880 SMART ring_2 828 866 IPR001841 -
Vium14439g00005 880 SUPERFAMILY RING/U-box 820 878 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14439g00005 Vium-Chr14439 16520 40294 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14439g00005 828 879 C3H Transcription Factor Family AT2G42030 39.623 1.82e-07 52.8