Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14439g00002 ATGAATCTTAGCTATGAACAGAAACTTCAAGTCGTTGCCAAAATCATACTAGACGATGAGGCACGCGCCGGCGACGTGCCGTCGTGTGAGGAAGAGCTCGGGCTCAGGGCGACTCTCAAGCCGCACCAGGTGGAAGGGGTTTCCTGGCTAATACGGAGGTACAAACTCGGCGTCAACGTTGTCCTCGGGGATGAGATGGGACTGGGCAAGACTTTGCAAGCTATCTCCTTTTTAAGCTATTTAAAAGTGTGCCAGTTGTCTGATGGGCCATTTTTGGTTATATGTCCTCTAAGTGTGACTGAGGGGTGGGTCTTAGAGATAGTTAAATTTACCCCCAAACTAACAGTGTTCAAATATGTTGGTGATAAAGAAAATAGGCGCAATCTACGCATGAAAATACATGAACATGTAGCAAGACAGTCATCAACAATCAATCAGGTCTTGTTGCCTTTTGATGTGCTATTGACTTCATATGACATTGCACTGGTGGATCAGGATTTTCTTTCTCAAATACCATGGCAGTATGCAATCATTGATGAAGCTCAAAGACTTAAAAATCCGTCTAGTGTATGTTGA 576 0.4427 MNLSYEQKLQVVAKIILDDEARAGDVPSCEEELGLRATLKPHQVEGVSWLIRRYKLGVNVVLGDEMGLGKTLQAISFLSYLKVCQLSDGPFLVICPLSVTEGWVLEIVKFTPKLTVFKYVGDKENRRNLRMKIHEHVARQSSTINQVLLPFDVLLTSYDIALVDQDFLSQIPWQYAIIDEAQRLKNPSSVC 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14439g00002 191 SMART ultradead3 35 191 IPR014001 -
Vium14439g00002 191 Pfam SNF2-related domain 56 189 IPR000330 GO:0005524|GO:0140658
Vium14439g00002 191 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 31 189 IPR027417 -
Vium14439g00002 191 Gene3D - 13 191 IPR038718 -
Vium14439g00002 191 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 51 191 IPR014001 -
Vium14439g00002 191 PANTHER SNF2/RAD54 HELICASE FAMILY 36 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14439g00002 Vium-Chr14439 1263 5594 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14439g00002 19 189 RAD5 or RAD16-like Gene Family AT1G02670 31.217 1.39e-08 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vium14439g00002 SNF2_N 9.4e-25 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14439g00002 K20092 - vum:124822543 381.719