Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14439g00001 ATGAATCTTAGCTATGAACAGAAACTTCAAGTCGTTGCCAAAATCATACTAGACGATGAGGCACGCGCCGGCGACGTGCCGTCGTGTGAGGAAGAGCTCGGGCTCAGGGCGACTCTCAAGCCGCACCAGGTGGAAGGGGTTTCCTGGCTAATACGGAGGTACAAACTCGGCGTCAACGTTGTCCTCGGGGATGAGATGGGACTGGGCAAGACTTTGCAAGCTATCTCCTTTTTAAGCTATTTAAAAGTGTGCCAGTTGTCTGATGGGCCATTTTTGGTTATATGTCCTCTAAGTGTGACTGAGGGGTGGGTCTTAGAGATAGTTAAATTTACCCCCAAACTAACAGTGTTCAAATATGTTGGTGATAAAGAAAATAGGCGCAATCTACGCATGAAAATACATGAACATGTAGCAAGACAGTCATCAACAATCAATGTCTTGTTGCCTTTTGATGTGCTATTGACTTCATATGACATTGCACTGGTGGATCAGGATTTTCTTTCTCAAATACCATGGCAGTATGCAATCATTGATGAAGCTCAAAGACTTAAAAATCCGTCTAGTGTATGTTGA 573 0.4415 MNLSYEQKLQVVAKIILDDEARAGDVPSCEEELGLRATLKPHQVEGVSWLIRRYKLGVNVVLGDEMGLGKTLQAISFLSYLKVCQLSDGPFLVICPLSVTEGWVLEIVKFTPKLTVFKYVGDKENRRNLRMKIHEHVARQSSTINVLLPFDVLLTSYDIALVDQDFLSQIPWQYAIIDEAQRLKNPSSVC 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14439g00001 190 PANTHER SNF2/RAD54 HELICASE FAMILY 36 189 - -
Vium14439g00001 190 Gene3D - 13 190 IPR038718 -
Vium14439g00001 190 Pfam SNF2-related domain 56 188 IPR000330 GO:0005524|GO:0140658
Vium14439g00001 190 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 31 188 IPR027417 -
Vium14439g00001 190 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 51 190 IPR014001 -
Vium14439g00001 190 SMART ultradead3 35 190 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14439g00001 Vium-Chr14439 1263 5594 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14439g00001 6 185 RAD5 or RAD16-like Gene Family AT3G16600 23.810 1.55e-09 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vium14439g00001 SNF2_N 3.4e-24 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14439g00001 K20092 - vum:124822543 375.17