Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14436g00005 ATGGTGTCCCTCAACTCAAACCCCCCTCAAACTTTTCCCTTCTTCGACCCCTTCAACATGGACGATCTCAATAAGAAGGTTCGGAAACCTTACACCATTACCAAGTCCAGAGAGAACTGGACCGACCACGAACATGACAAGTTTCTCGAAGCTCTTCACTTATTCGACCGTGACTGGAAGAAGATTGAAGCATTTGTGGGTTCAAAAACAGTCATCCAGATAAGAAGTCATGCACAGAAGTATTTCATGAAAGTTCAGAAGAATGGAACAAGTGAACATGTACCTCCCCCTCGACCCAAAAGAAAAGCTGCTCATCCATACCCACAAAAGGCTTCTAAAAATGCTCTCACTATATCCAAAGTTACAAGGCCTTTGCAATCTTCATCTGCTTTGTCGGAATCGTCATTCATTTATAGGCCAGACTCGTCATCTGTGCTTAGAACTGCAGTTAGCAGTCTGCCATTGCCATCTTGGGGTTATAATCTTCCGCCACAAGTTGGTCTTCTTCCTAAAGCGACAAAAGAACATATGGTGTTGAATCAAAAAGTCAACCCCTTCAATTACTGCTACAGCAGTAGTAATGAGAGCAAACAGACAGATCAGGGTGACCAAGGCCAGCCAATTAAAGCAATGCCAGATTTTGCACAAGTATATAGCTTCATTGGTTGTGTGTTCGATCCAAATGTGACTAATCATTTACAAACACTGCAACAGATGGACCCAATAAATGTGAAAACCCAGGTATTGCTGCTGATGAGAAACCTCTCCACCAATTTAAGAAGTCCTGAGTTTGAGAATGAAAGAAGGATGCTGTCATTGTACAATGCTAACTCAGAGAGAGCAAAATCATCTGGGCCATCTTTAACTGACAGATCAGAGAGTGTTATCTTATCTGCTTAA 900 0.4222 MVSLNSNPPQTFPFFDPFNMDDLNKKVRKPYTITKSRENWTDHEHDKFLEALHLFDRDWKKIEAFVGSKTVIQIRSHAQKYFMKVQKNGTSEHVPPPRPKRKAAHPYPQKASKNALTISKVTRPLQSSSALSESSFIYRPDSSSVLRTAVSSLPLPSWGYNLPPQVGLLPKATKEHMVLNQKVNPFNYCYSSSNESKQTDQGDQGQPIKAMPDFAQVYSFIGCVFDPNVTNHLQTLQQMDPINVKTQVLLLMRNLSTNLRSPEFENERRMLSLYNANSERAKSSGPSLTDRSESVILSA 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14436g00005 299 ProSiteProfiles SANT domain profile. 35 88 IPR017884 -
Vium14436g00005 299 Pfam Myb-like DNA-binding domain 37 82 IPR001005 -
Vium14436g00005 299 Gene3D - 39 87 - -
Vium14436g00005 299 SUPERFAMILY Homeodomain-like 31 87 IPR009057 -
Vium14436g00005 299 CDD SANT 39 82 IPR001005 -
Vium14436g00005 299 FunFam protein REVEILLE 6 isoform X1 39 87 - -
Vium14436g00005 299 NCBIfam myb-like DNA-binding domain, SHAQKYF class 35 84 IPR006447 GO:0003677
Vium14436g00005 299 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 86 IPR017930 -
Vium14436g00005 299 PANTHER SWI/SNF COMPLEX-RELATED 20 267 - -
Vium14436g00005 299 MobiDBLite consensus disorder prediction 277 299 - -
Vium14436g00005 299 MobiDBLite consensus disorder prediction 88 110 - -
Vium14436g00005 299 SMART sant 36 84 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14436g00005 Vium-Chr14436 23051 28477 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vium14436g00005 Myb_DNA-binding 2.6e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14436g00005 - - gmx:100791774 451.825