Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14436g00001 ATGGCGACGGCTCCTTCGCTTCTACACTCATCCGGGTCCTCATTTTTCGCTCAATTTCGTGCATTTCCATTATCTTCTTCCACTTCAGTGTTCCCTCATGTAAAAAGACATGGGAATGTGGTGGTGCCTGTGAGGGCCTCTGATTCTGGGGTTGTGTTGGTGGAGAAATCCGACGCAGAGAAGACCAATAGGCTCAAAACAGCATACACTGAGAAAATAGTTCCCTTGCTCGTAGAAGAGTTCTCTTACACCAACAAGCACCAGGTGCCTAAAATTGAGAAGATTGTGGTTAACTGTGGTATTGGAGACGCTGCACAAAATTCCAAGGGTTTGGACGCGGCAATAAGTGATCTAGCAATGATCACTGGGCAGAGACCTGTGAAGACTCGGGCTAGGGCTTCTCTTGCCACATTTAAGATCAGGGAAGGTCAACCGCTTGGGATTGCTGTGACACTAAGAGGAAACATTATGTACTCATTCCTAGACCGAGTCATCAACTTGGGACTTCCCAGAACAAGAGATTTCCAAGGTGTGAACTCCAACAGCTTTGATGGGCATGGAAATTACAGCATTGGCGTAAAGGACCAGGGTGTGTTCCCAGAGATCAGAGCTGATGTTGTTGGCAAGCCTAGGGGAATGGACATCTGCATCAACACAACGGCTAACACTGATAAAGAAGCTCAAAGATTATTGGCTCTTATGGGTATGCCCTTCAGAGAGGGAAGTGGTTCTGTCGCGGCGGCCGGACGGAAAAAGAAGCTTAAGTCTCATCATTTTGATTCAAAAAGGGGTGGAAGAGGAAGGAAGTGA 810 0.4728 MATAPSLLHSSGSSFFAQFRAFPLSSSTSVFPHVKRHGNVVVPVRASDSGVVLVEKSDAEKTNRLKTAYTEKIVPLLVEEFSYTNKHQVPKIEKIVVNCGIGDAAQNSKGLDAAISDLAMITGQRPVKTRARASLATFKIREGQPLGIAVTLRGNIMYSFLDRVINLGLPRTRDFQGVNSNSFDGHGNYSIGVKDQGVFPEIRADVVGKPRGMDICINTTANTDKEAQRLLALMGMPFREGSGSVAAAGRKKKLKSHHFDSKRGGRGRK 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14436g00001 269 Hamap 50S ribosomal protein L5 [rplE]. 62 240 IPR020930 GO:0003735|GO:0005840|GO:0006412
Vium14436g00001 269 ProSitePatterns Ribosomal protein L5 signature. 118 134 IPR020929 GO:0003735|GO:0005840|GO:0006412
Vium14436g00001 269 MobiDBLite consensus disorder prediction 250 269 - -
Vium14436g00001 269 Pfam Ribosomal protein L5 85 141 IPR031310 -
Vium14436g00001 269 SUPERFAMILY RL5-like 64 239 IPR022803 -
Vium14436g00001 269 MobiDBLite consensus disorder prediction 243 269 - -
Vium14436g00001 269 FunFam 50S ribosomal protein L5 61 240 - -
Vium14436g00001 269 Gene3D - 56 240 IPR022803 -
Vium14436g00001 269 PANTHER 60S RIBOSOMAL PROTEIN L11-RELATED 66 241 IPR002132 GO:0003735|GO:0005840|GO:0006412
Vium14436g00001 269 Pfam ribosomal L5P family C-terminus 145 238 IPR031309 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14436g00001 77 196 Cytoplasmic Ribosomal Protein Gene Family AT5G45775 25.000 8.26e-06 43.5