Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1442g00013 ATGTTTTTCTTTGAAGTGCCTTTTTCCAAATTGTTTCTCGTCGTTCTTTGGTCGTTTTCAACAGTTATTATATCTCTTGTTAATGTTGTCAGTTTACCAAACAATTACAGTGTTCCAGCAGTGTTTGTGTTTGGAGACTCCATAGTAGATACAGGTAACAATAACTACATTAAGACCATAGCCAAATGTAATTTTCGACCATATGGTAAAGATTTTGGTGGAGGAAATCAACCAACTGGGAGGTTCAGCAATGGTTTAGTCCCTTCAGATATCATTGCTGCAAAATTTGAAGTGAAGAAGCTTTTGCCACCGTACCTTGATCCAAATTTGAAACGTGAAGATCTCCTCACAGGTGTAAGCTTTGCATCTGGTGCTAATGGATATGATCCTCTAACTTCTAAAATAGCATTAGTGCTATCATTATCAGATCAACTGGACAAATTCAAGGAATACATAAAAAAGATACAGGGCATGGTCGGAGAAAACACAACAACATCACTGATATCGAAAAGCTTATACATCTTATGCACAGGAAGCAATGACATTACCCATACTTTCTTTTTGAGGCGGCTGAAATATAATATTTCAACTTACACAGACTTCATGGCTTCACAAGCTACAATGTTCTTAAAAGAACTTCATGGACTTGGAGCTAGAAGAATTGGAATTCTTGGTTTGCCAAATGTAGGGTGTGTACCCTTTGAAAGAACAATCAGAGGAGGATTTAAGAGAGCATGTTCAGATGCTGATAATCAGGCTGCGATGTTGTTCAACAACAAGCTATCATCCCAAATAGATATTCTTGGGAAAAATTTTCCTGATGCTAGACTTGTATACCTTGATGTTTACAACCCATTATCGGATATGATTCAAAACCCCTCTAAATATGGTTTTGAAGTAGCAGATAAAGGATGCTGTGGCACAGGAGATTTTGAGGTAGGCTTTTTGTGTAACCCTGTCCTGAAGATATGTTCAAACAGGTCAAGTTATATATTTTGGGACAGTTTCCATCCTACAGAGAGGGCCTTTAATATACTTTCTTCTGAGGTGTTAGACAAAAACATCAACAAATTCTTCTGA 1080 0.3722 MFFFEVPFSKLFLVVLWSFSTVIISLVNVVSLPNNYSVPAVFVFGDSIVDTGNNNYIKTIAKCNFRPYGKDFGGGNQPTGRFSNGLVPSDIIAAKFEVKKLLPPYLDPNLKREDLLTGVSFASGANGYDPLTSKIALVLSLSDQLDKFKEYIKKIQGMVGENTTTSLISKSLYILCTGSNDITHTFFLRRLKYNISTYTDFMASQATMFLKELHGLGARRIGILGLPNVGCVPFERTIRGGFKRACSDADNQAAMLFNNKLSSQIDILGKNFPDARLVYLDVYNPLSDMIQNPSKYGFEVADKGCCGTGDFEVGFLCNPVLKICSNRSSYIFWDSFHPTERAFNILSSEVLDKNINKFF 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1442g00013 359 CDD SGNH_plant_lipase_like 39 354 IPR035669 -
Vium1442g00013 359 Pfam GDSL-like Lipase/Acylhydrolase 41 349 IPR001087 GO:0016788
Vium1442g00013 359 SUPERFAMILY SGNH hydrolase 171 351 - -
Vium1442g00013 359 PANTHER GDSL ESTERASE/LIPASE EXL3 20 349 - -
Vium1442g00013 359 Gene3D SGNH hydrolase 29 355 IPR036514 -
Vium1442g00013 359 FunFam GDSL esterase/lipase APG 30 355 - -
Vium1442g00013 359 ProSitePatterns Lipolytic enzymes "G-D-S-L" family, serine active site. 41 52 IPR008265 GO:0006629|GO:0016298
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1442g00013 Vium-Chr1442 74477 82426 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1442g00013 14 352 Pollen Coat Proteome AT1G75910 38.793 7.09e-71 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1442g00013 - - gmx:100808475 522.702