Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1442g00009 ATGGCCGTGTCACTGTGCAGAAGTCGCACTGCTTCATCACTGAATTTGTTTGCCAATACTCTTCGCCGATTCTCTACTGAGGTGACAAACACCAGTGCTCAAAGAACGCCAGAGAGTATAGTGAATCAAATGATGTATTCTGACATAAACTCACGAATTGGGAGTTGCATGCCACTGTCTGCAATGCGAATTGGAACAATCATTCACAACATTGAATTGAACCCAGGGCAAGGTGGCAAGCTTGTCCGAGCTGCAGGAACTAGTGCAAAGATCTTGAAAGAGCCCACATCAGCATACTGTTTAATCCAGATGCCCTCTGGTGTTAAAAAGTTAATTGATTCTCGGTGTAGGGCCACCATTGGTGTTGTGTCTAATCCAAGCCATGGGGATCGCAAGCTTAGGAATGCCGGACACAGCCGATGGCTTGGTCGAAGACCTGTTGTTCGAGGAGTGGCTATGAATCCCGTAGATCATCCTCATGGGGGAGGAGAGGGTAAAAGCAAGAGTAGTGGAAAATGGGGAAAAGGATCTCGCACTCCTTGGGGCAAGCCAACCAAGGGTGGCTATAAGACTGGACCCCTGAAGCGCAGAAAGTAG 597 0.4824 MAVSLCRSRTASSLNLFANTLRRFSTEVTNTSAQRTPESIVNQMMYSDINSRIGSCMPLSAMRIGTIIHNIELNPGQGGKLVRAAGTSAKILKEPTSAYCLIQMPSGVKKLIDSRCRATIGVVSNPSHGDRKLRNAGHSRWLGRRPVVRGVAMNPVDHPHGGGEGKSKSSGKWGKGSRTPWGKPTKGGYKTGPLKRRK 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1442g00009 198 MobiDBLite consensus disorder prediction 152 198 - -
Vium1442g00009 198 PANTHER RIBOSOMAL PROTEIN L2 42 196 IPR002171 GO:0003735|GO:0005840|GO:0006412
Vium1442g00009 198 ProSitePatterns Ribosomal protein L2 signature. 146 157 IPR022671 GO:0003735|GO:0005840|GO:0006412
Vium1442g00009 198 SMART Ribosomal_L2_C_2 51 184 IPR022669 GO:0003735|GO:0005840|GO:0006412
Vium1442g00009 198 FunFam 50S ribosomal protein L2 124 198 - -
Vium1442g00009 198 FunFam 60S ribosomal protein L2, mitochondrial 47 123 - -
Vium1442g00009 198 Pfam Ribosomal Proteins L2, C-terminal domain 53 182 IPR022669 GO:0003735|GO:0005840|GO:0006412
Vium1442g00009 198 Gene3D Ribosomal protein L2, domain 3 124 198 IPR014726 -
Vium1442g00009 198 SUPERFAMILY Translation proteins SH3-like domain 53 188 IPR008991 -
Vium1442g00009 198 Gene3D - 47 123 IPR014722 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1442g00009 Vium-Chr1442 49454 51469 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1442g00009 43 163 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 41.085 1.37e-22 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1442g00009 - - gmx:100792418 309.301