Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1442g00007 ATGAACGTCATTAATTTACGATTTTGCCACTCTCCCCAACTCCTCCATTCACCAAATCTCCTCTTCGTTGTTCCTTCTTCACAAACTCCAAACTTCACTCTGAGAAACCCAACAACCCCATTTGCTATTTCCTTAAAAAATCGATTCTTTTCTCCAATTCGTGCGTCCATGGCCTCTTCAGCCTCCGTCACGGAGAACGAAACAAAGCCATTTTCCGTTCTCTTCGTGTGCCTTGGCAACATCTGCAGAAGCCCCGCTGCCGAAGGAGTCTTCACTGACTTAGTCAACAAAAAGAGCCTCAATTCGATTTTCAGAATTGATTCGGCTGGCACCATCAATTACCACGAGGGAAATGAAGCGGACCCGAGAATGAGGGCAGCCTCAAAGAAGCGTGGGATTCAGATAACTTCTATTTCAAGGCCAATCAAGCCCTCTGATTTCACTGACTTTGACCTCATTCTGGCTATGGACAAGCAGAACAGAGAGGACATACTGGTGGCCTTTAATAGATGGAAAGGAAAACATTCCTTACCGGATGATGCACATAAAAAGGTTAAGTTGATGTGCTCATATTGTAAGAAGCATGATGAAAGTGAAGTCCCGGATCCCTATTATGGTGGAGCGCAAGGGTTTGAGAAGGTGTTAGATTTGCTAGAAGACGCTTGCGGATCATTACTGGAAACCATTTTGGCAGAAAATAAACATTTACAAGAATCCTGA 720 0.4417 MNVINLRFCHSPQLLHSPNLLFVVPSSQTPNFTLRNPTTPFAISLKNRFFSPIRASMASSASVTENETKPFSVLFVCLGNICRSPAAEGVFTDLVNKKSLNSIFRIDSAGTINYHEGNEADPRMRAASKKRGIQITSISRPIKPSDFTDFDLILAMDKQNREDILVAFNRWKGKHSLPDDAHKKVKLMCSYCKKHDESEVPDPYYGGAQGFEKVLDLLEDACGSLLETILAENKHLQES 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1442g00007 239 PRINTS LMW phosphotyrosine protein phosphatase signature 116 132 IPR017867 GO:0004725|GO:0006470
Vium1442g00007 239 PRINTS LMW phosphotyrosine protein phosphatase signature 200 215 IPR017867 GO:0004725|GO:0006470
Vium1442g00007 239 PRINTS LMW phosphotyrosine protein phosphatase signature 73 90 IPR017867 GO:0004725|GO:0006470
Vium1442g00007 239 SUPERFAMILY Phosphotyrosine protein phosphatases I 69 229 IPR036196 -
Vium1442g00007 239 SMART LMWPc_2 71 228 IPR023485 -
Vium1442g00007 239 PANTHER LOW MOLECULAR WEIGHT PHOSPHOTYROSINE PROTEIN PHOSPHATASE-RELATED 46 234 - -
Vium1442g00007 239 Pfam Low molecular weight phosphotyrosine protein phosphatase 73 226 IPR023485 -
Vium1442g00007 239 CDD LMWPTP 72 227 - -
Vium1442g00007 239 FunFam Low molecular weight protein-tyrosine-phosphatase 70 234 - -
Vium1442g00007 239 Gene3D - 54 234 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1442g00007 35 233 Protein tyrosine phosphatase (PTP) family AT3G44620 59.735 8.02e-90 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1442g00007 K25307 - gmx:100797254 387.882