Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14412g00009 ATGATGACAGGGTTTCCTAACTGGTGGAGCATGCATCCACCATCTTTGATCCCTCCCCAATATCTTCTTCCACCTTCCTCAATTTCTTTTAATTTTTTCACCGAAAATCCAGACCCTCCTCAGTCATGGACCCAACTGCTTTCTACTGGATTACCCGGAGAAGAAGAGAAACTTGGTTTCATTGATTTTCAGCAGAAAAAGTTGGAAAACTGGGATGTCCAAATTCTTAATACTGCTTCCGGAGTTTCCAATAACTTTGATGAAATAAAGCAAGAGACTTCTCAAAGGGGCACTTTGTACGAACATGAGCATGAAGAATTTCAGGCTTCTGGCCCCGCTGACTCATCTTGGTCACACATGGTGCCTGTTTCTTCATCCGGGTCTTGTTGTGTCACTAGCATCAGTGGCAATAATATATTTGATTTCAGTTATAACAAGTCAGATCACAGCAAAAATCTTCTACGAGACCAAATATCCGAGTGTAATAGCACAGCCACAGTTGGTGTTTGTAAGAAAGCTAGGGTTCAGTCATCTTCAAGTCAAGCACCTATCAAGGTTCGGAAGGAGAAGCTAAGTGATAGAATAACAACACTTCACCAACTAGTTTCCCCGTTTGGAAAGACTGACACAGCTTCTGTCTTGTTAGAAGCCATTGGATATATAAGGTTCCTGCAGGGTCAAATCGAGGCACTCAGTTCTCCTTACTTGGAAGATGTATCAAAAAACACGAGGAATCAACAGTCTCTGCTGAAAGAGAATAATGGCCTGAAAAGAAAAGGAGCTACAAACCAGGAAGCTGAAGATAAAGCAAAGGAGTTGAAGAGTAGAGGGTTATGCTTGATGCCGGTGTCTTGTACCCAAGATGTTGTGAGCCAAAATGACTGGGGCACTCGCATATACGGCAGAGGATTTTAA 915 0.4251 MMTGFPNWWSMHPPSLIPPQYLLPPSSISFNFFTENPDPPQSWTQLLSTGLPGEEEKLGFIDFQQKKLENWDVQILNTASGVSNNFDEIKQETSQRGTLYEHEHEEFQASGPADSSWSHMVPVSSSGSCCVTSISGNNIFDFSYNKSDHSKNLLRDQISECNSTATVGVCKKARVQSSSSQAPIKVRKEKLSDRITTLHQLVSPFGKTDTASVLLEAIGYIRFLQGQIEALSSPYLEDVSKNTRNQQSLLKENNGLKRKGATNQEAEDKAKELKSRGLCLMPVSCTQDVVSQNDWGTRIYGRGF 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14412g00009 304 Coils Coil 256 276 - -
Vium14412g00009 304 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 80 288 - -
Vium14412g00009 304 Gene3D - 184 251 IPR036638 GO:0046983
Vium14412g00009 304 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 175 224 IPR011598 GO:0046983
Vium14412g00009 304 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 185 235 IPR036638 GO:0046983
Vium14412g00009 304 CDD bHLH_AtbHLH_like 183 232 IPR045239 -
Vium14412g00009 304 MobiDBLite consensus disorder prediction 249 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14412g00009 Vium-Chr14412 45805 48263 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14412g00009 165 285 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27660 55.738 1.54e-32 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14412g00009 - - vun:114183597 464.922