Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14412g00008 ATGTCTAGAGCATTGGAACAGGACTACATAGGGTTGGCAGAGAAACCGTCAATGGACGGAGGCTCTGACAAACTATCTTCTTCTTCTTCGTCATCTTCTGTGGATGGTAAAACCTCATCACTGAACTTGAAGGAGACAGAACTGAGGCTTGGTCTCCCCGGTTGCAAGTCACCAGAGAGAAAATCTGGTCCTGGACTCTGTCTTTTTGGCAGAGAGTTGCAGAACAAGCATAATGTTTGTTCAGTCGCAACTCCTTTGAAGGCTGGGGCTAAGAGGGGATTCTCTGATGCTATTGACGCTTCTTCTGGGAAAAGGGGTTCTTCTGTCACCGATGGATCTCAAGGAGCTGCTTTGTTCTCTCCCAGAGGGGGCATTGTTGGGAAGCCTCTTATTGCTTTAGACACTCAAACTAATACCTCGCATGCTAACACCTCTATCAAAGAGGTTGGTGCAGTTCCTCAATCTGCCAAACCGGTTCAGGAGAAGAATGACCGGGTTGCTGCAACAGATGGTCATGCCAGTGCTTCTGATGCAAAGGCACAAGTTGTGGGGTGGCCCCCAATTCGATCTTTCCGAAAGAACACGATGGCATCTAATCTGGCAAAAAACAGTGATGAAGGCGAGGGAAAATCTGGTTTTGGTTGTCTCTATGTAAAAGTCAGTATGGATGGTGCTCCTTATCTTAGAAAGGTTGATCTCAAAACCTATAACAACTACATGGAACTTTCTTCAGCTCTTGAGAAGATGTTCAGCTGCTTTACCATTGGTCAATGCAATTCTCCTGGATTTCCTGGGAAAGATGGACTAAGTGAGAGCTCTCTGAGGGATCTTCTTCATGGATCTGAATATGTTCTTACATATGAAGATAAAGATGGAGACTGGATGCTTGTGGGTGATGTTCCTTGGGAGATGTTCACTGATTCATGTCGGAGACTAAGGATCATGAAAGGCTCTGAAGCAATTGGGCTAGCTCCAAGAGCCATGGAGAAATCTAGAAGCCAAAACTAG 1008 0.4573 MSRALEQDYIGLAEKPSMDGGSDKLSSSSSSSSVDGKTSSLNLKETELRLGLPGCKSPERKSGPGLCLFGRELQNKHNVCSVATPLKAGAKRGFSDAIDASSGKRGSSVTDGSQGAALFSPRGGIVGKPLIALDTQTNTSHANTSIKEVGAVPQSAKPVQEKNDRVAATDGHASASDAKAQVVGWPPIRSFRKNTMASNLAKNSDEGEGKSGFGCLYVKVSMDGAPYLRKVDLKTYNNYMELSSALEKMFSCFTIGQCNSPGFPGKDGLSESSLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCRRLRIMKGSEAIGLAPRAMEKSRSQN 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14412g00008 335 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 41 322 IPR003311 GO:0005634|GO:0006355
Vium14412g00008 335 FunFam Auxin-responsive protein 210 327 - -
Vium14412g00008 335 ProSiteProfiles PB1 domain profile. 215 317 IPR000270 GO:0005515
Vium14412g00008 335 MobiDBLite consensus disorder prediction 1 43 - -
Vium14412g00008 335 Pfam AUX/IAA family 45 326 IPR033389 -
Vium14412g00008 335 MobiDBLite consensus disorder prediction 143 179 - -
Vium14412g00008 335 SUPERFAMILY CAD & PB1 domains 215 316 - -
Vium14412g00008 335 MobiDBLite consensus disorder prediction 21 43 - -
Vium14412g00008 335 Gene3D - 210 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14412g00008 Vium-Chr14412 29721 32273 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14412g00008 217 329 B3 DNA Binding Superfamily AT1G19850 32.174 5.80e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vium14412g00008 AUX_IAA 2.8e-90 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14412g00008 K14484 - gmx:100804423 540.421